Job Description P0AAG5 Confidence 100.00% Date Thu Jan 5 11:12:52 GMT 2012 Rank 5 Aligned Residues 568 % Identity 28% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	T	L	K	R	L	L	A	Y	G	S	P	W	R	K	P	L	G	I	A	V	L	M	M	W	V	A	A	A	A	E	V	S	G	P	L	L	I	S	Y	F	I	D	N	M	V	A	K	N	N	L	P	L	K	V	V	A	G	L	A	A	A	Y	V	G	L	Q	L	F	A	A	G	L	H	Y	A	Q	S	L
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		W	Q	T	F	K	R	L	W	T	Y	I	R	L	Y	K	A	G	L	V	V	S	T	I	A	L	V	I	N	A	A	A	D	T	Y	M	I	S	L	L	K	P	L	L	D	E	G	F	G	N	A	E	S	N	F	L	R	I	.	.	L	P	F	M	I	L	G	L	M	F	V	R	G	L	S	G	F	A	S	S	Y
Template Known Secondary structure			T										T	T	S	G	G	G	G	T	T	T	T	T	T	T												T	T	T	T	T	T					S	S	S	T	B	T	T	B	T	T	T	.	.	S	T	T	T	T									G	G	G	T	T	T	T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	N	R	A	A	V	G	V	V	Q	Q	L	R	T	D	V	M	D	A	A	L	R	Q	P	L	S	E	F	D	T	Q	P	V	G	Q	V	I	S	R	V	T	N	D	T	E	V	I	R	D	L	Y	V	T	V	V	A	T	V	L	R	S	A	A	L	V	G	A	M	L	V	A	M	F	S	L	D	W	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	L	S	W	V	S	G	N	V	V	M	Q	M	R	R	R	L	F	N	H	F	M	H	M	P	V	R	F	F	D	Q	E	S	T	G	G	L	L	S	R	I	T	Y	D	S	E	Q	V	A	G	A	T	S	R	A	L	V	S	I	V	R	E	G	A	S	I	I	G	L	L	T	L	M	F	W	N	S	W	Q	L
Template Known Secondary structure		T	T	S	S	S	S	S																T	S	T	T	T	T	T	T	T	S									T	T	T													T	T	T	T	S	T	T	S	S	S	T	T	T	T	T	T	T	T	T	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	A	I	M	I	F	P	V	V	L	V	V	M	V	I	Y	Q	R	Y	S	T	P	I	V	R	R	V	R	A	Y	L	A	D	I	N	D	G	F	N	E	I	I	N	G	M	S	V	I	Q	Q	F	R	Q	Q	A	R	F	G	E	R	M	G	E	A	S	R	S	H	Y	M	A	R	M	Q	T	L	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	V	L	I	V	V	A	P	V	V	A	F	A	I	S	F	V	S	K	R	F	R	K	I	S	R	N	M	Q	T	A	M	G	H	V	T	S	S	A	E	Q	M	L	K	G	H	K	V	V	L	S	Y	G	G	Q	E	V	E	R	K	R	F	D	K	V	S	N	S	M	R	Q	Q	T	M	K	L	V	S	A
Template Known Secondary structure		S	S	T	T	T	T	T	T	T	T	T	T	T							T	T	T	T	T	T	T	T	T	T	T	T	T											G	G	G											T	T																							T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	F	L	L	R	P	L	L	S	L	F	S	S	L	I	L	C	G	L	L	M	L	F	G	F	S	A	S	G	T	I	E	V	G	V	L	Y	A	F	I	S	Y	L	G	R	L	N	E	P	L	I	E	L	T	T	Q	Q	A	M	L	Q	Q	A	V	V	A	G	E	R	V	F	E	L	M	D	G	P	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	I	A	D	P	V	I	Q	M	I	A	S	L	A	L	F	A	V	L	F	L	A	S	V	D	S	I	R	A	E	L	T	P	G	T	F	T	V	V	F	S	A	M	F	G	L	M	R	P	L	K	A	L	T	S	V	T	S	E	F	Q	R	G	M	A	A	C	Q	T	L	F	G	L	M	D	L	E	T	E
Template Known Secondary structure		T	T	T									T	T	T	T	T	T	T	T	T	T					T	T	T	T		T	T	S	S	S	S	T	T	T	T	T	T	T	T																											T	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure														.														.
Query SS confidence														.														.
Query Sequence		Q	Y	G	N	D	D	R	P	L	Q	S	G	.	T	I	E	V	D	N	V	S	F	A	Y	R	D	.	D	N	L	V	L	K	N	I	N	L	S	V	P	S	R	N	F	V	A	L	V	G	H	T	G	S	G	K	S	T	L	A	S	L	L	M	G	Y	Y	P	L	T	E	G	E	I	R	L	D	G	R	P	L
Query Conservation														.														.
Alig confidence														.														.
Template Conservation
Template Sequence		R	D	N	G	K	Y	E	A	E	R	V	N	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L	D	G	H	D	V
Template Known Secondary structure						S	S			S							B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S					S				T	T			S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.			.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		S	S	L	S	H	S	A	L	R	Q	G	V	A	M	V	Q	Q	D	P	V	V	L	A	D	T	F	L	A	N	V	T	L	G	.	.	R	D	I	S	E	E	R	V	W	Q	A	L	E	T	V	Q	L	A	E	L	A	R	S	M	S	D	G	I	Y	T	P	L	G	E	Q	G	N	N	L	S	V	G	Q	K	Q
Query Conservation																																			.	.
Alig confidence																																			.	.
Template Conservation
Template Sequence		R	D	Y	K	L	T	N	L	R	R	H	F	A	L	V	S	Q	N	V	H	L	F	N	D	T	I	A	N	N	I	A	Y	A	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G	Q	R	Q
Template Known Secondary structure		T	T	S		S	S	S	S	S	T	T						S	S					T	T								T	T	S	S	S	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S		S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	L	A	R	V	L	V	E	T	P	Q	I	L	I	L	D	E	A	T	A	S	I	D	S	G	T	E	Q	A	I	Q	H	A	L	A	A	V	R	E	H	T	T	L	V	V	I	A	H	R	L	S	T	I	V	D	A	D	T	I	L	V	L	H	R	G	Q	A	V	E	Q	G	T	H	Q	Q	L	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	N	K	T	V	L	V	I	A	H	R	L	S	T	I	E	Q	A	D	E	I	L	V	V	D	E	G	E	I	I	E	R	G	R	H	A	D	L	L	A
Template Known Secondary structure										T				S	S						S		S	S			T	T	T										T	T	T	T	T	S							S		G	G	G	G	G	T		S							S	S						S							S
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	G	R	Y	W	Q	M	Y	Q	L	Q	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	G	A	Y	A	Q	L	H	R	I	Q	F	G
Template Known Secondary structure		S			T	T	T	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.