Job Description P0AAG5 Confidence 95.79% Date Thu Jan 5 11:12:52 GMT 2012 Rank 168 Aligned Residues 129 % Identity 22% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	I	N	L	S	V	P	S	R	N	F	V	A	L	V	G	H	T	G	S	G	K	S	T	L	A	S	L	L	M	G	Y	Y	P	L	T	E	G	E	I	R	L	D	G	R	P	L	S	S	L	S	H	S	A	L	R	Q	G	V	A	M	V	Q	Q	D	P	V	V	L	A	D	T	F	L	A	N	V	T	L
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S	S										S	S	S	S	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		G	R	D	I	S	E	E	R	V	W	Q	A	L	E	T	V	Q	L	A	E	L	A	R	S	M	S	D	G	I	Y	T	P	L	G	E	Q	G	N	N	L	S	V	G	Q	K	Q	L	L	A	L	A	R	V	L	V	E	T	P	Q	I	L	I	L	D	E	A	T	.	A	S	I	D	S	G	T	E	Q	A	I	Q
Query Conservation																																																																					.
Alig confidence		.																	.	.	.	.	.	.	.																	.	.	.	.	.									.	.													.
Template Conservation		.																	.	.	.	.	.	.	.																	.	.	.	.	.									.	.
Template Sequence		.	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	.	.	.	.	.	.	.	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	.	.	.	.	.	V	K	E	G	M	E	K	F	.	.	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K
Template Known Secondary structure		.		T	T	G	G	G	S	S							S	S	.	.	.	.	.	.	.							S	S	S			S	S	S	T	T	.	.	.	.	.							T	T	.	.	S	S		S									S		S	S
Template Predicted Secondary structure		.																	.	.	.	.	.	.	.																	.	.	.	.	.									.	.
Template SS confidence
			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	L	A	A	V	R	E	H	T	T	L	V	V	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D
Template Known Secondary structure			T	T	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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