Job Description P0AAG5 Confidence 96.76% Date Thu Jan 5 11:12:52 GMT 2012 Rank 118 Aligned Residues 123 % Identity 28% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	R	N	F	V	A	L	V	G	H	T	G	S	G	K	S	T	L	A	S	L	L	M	G	Y	Y	P	L	T	E	G	E	I	R	L	D	G	R	P	L	S	S	L	S	H	S	A	L	R	Q	G	V	A	M	V	Q	Q	D	P	V	V	L	A	D	T	F	L	A	N	V	T	L	G	R	D	I	S	E	E
Query Conservation
Alig confidence																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	.	G	K	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	L	L	V	A	A	D	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	A	A	R	E
Template Known Secondary structure			S	S									T	T	S	S														.		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.																			.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		R	V	W	Q	A	L	E	T	V	Q	L	A	E	L	A	R	S	M	S	D	G	I	Y	T	P	L	G	E	Q	G	N	N	L	S	V	G	Q	K	Q	L	L	A	L	A	R	V	L	V	E	T	P	Q	I	L	I	L	D	E	A	T	.	A	S	I	D	S	G	T	E	Q	A	I	Q	H	A	L	A	A	V	R
Query Conservation																																																														.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	R	L	L	G	E	K	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G
Template Known Secondary structure											T		.	.	.	.	.	.	.	.	.	.	.	.	.							T	T																		T		S										S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.														.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		524	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	T	T	L	V	V	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	E	V	L	L	V	L	D
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions