Job Description P0AAG5 Confidence 100.00% Date Thu Jan 5 11:12:52 GMT 2012 Rank 13 Aligned Residues 532 % Identity 14% Template c2iw3B_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp Resolution 2.4 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		L	W	P	T	L	K	R	L	L	A	Y	G	S	P	W	R	K	P	L	G	I	A	V	L	M	M	W	V	A	A	A	A	E	V	S	G	P	L	L	I	S	Y	F	I	D	N	M	V	A	K	.	.	N	N	L	P	L	K	V	V	A	G	L	A	A	A	Y	V	G	L	Q	L	F	A	A	G	L	H	Y	A
Query Conservation																																																				.	.
Alig confidence																.																																				.	.
Template Conservation																.
Template Sequence		I	V	Q	L	V	P	A	I	C	T	N	A	G	N	.	K	D	K	E	I	Q	S	V	A	S	E	T	L	I	S	I	V	N	A	V	N	P	V	A	I	K	A	L	L	P	H	L	T	N	A	I	V	E	T	N	K	W	Q	E	K	I	A	I	L	A	A	F	S	A	X	V	D	A	A	K	D	Q	V	A	L
Template Known Secondary structure				T	T								T	T		.	S	S																		S		G	G	G																																			S
Template Predicted Secondary structure																.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	L	F	N	R	A	A	V	G	V	V	Q	Q	L	R	T	D	V	M	D	A	A	L	R	Q	P	L	S	E	F	D	T	Q	P	V	G	Q	V	I	S	R	V	T	N	D	T	E	V	I	R	D	L	Y	V	T	V	V	A	T	V	L	R	S	A	A	L	V	G	A	M	L	V	A	M	F	S	L	D
Query Conservation
Alig confidence																																																							.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		R	X	P	E	L	I	P	V	L	S	E	T	X	W	D	T	K	K	E	V	K	A	A	A	T	A	A	X	T	K	A	T	E	T	V	D	N	K	D	I	E	R	F	I	P	S	L	I	Q	C	I	A	D	.	.	.	.	.	P	T	E	V	P	E	T	V	H	L	L	G	A	T	T	F	V	A	E	V	T	P
Template Known Secondary structure														T	T		S																G	G	G			S	S	T	T	G	G	G											.	.	.	.	.	G	G	G									T	T					S
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		W	R	M	A	L	V	A	I	M	I	F	P	V	V	L	V	V	M	V	I	Y	Q	R	Y	S	T	P	I	V	R	R	V	R	A	.	.	.	Y	L	A	D	I	N	D	G	F	N	E	I	I	N	G	M	S	V	I	Q	Q	F	R	Q	Q	A	R	F	G	E	R	M	G	E	A	S	R	S	H	Y	M	A	R
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		A	T	L	S	I	X	V	P	L	L	S	R	G	L	N	E	R	E	T	G	I	K	R	K	S	A	V	I	I	D	N	X	C	K	L	V	E	D	P	Q	V	I	A	P	F	L	G	K	L	L	P	G	L	K	S	N	F	A	T	I	A	D	P	E	A	R	E	V	T	L	R	A	L	K	T	L	R	R	V	G
Template Known Secondary structure																T	S	S	S																T	T												T	T	T																															T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
																					242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	T	L	R	L	D	G	F	L	L	R	P	L	L	S	L	F	S	S	L	I	L	C	G	L	L	M	L	F	G	F	S	A	S	G	T	I	E	V	G	V	L	Y	A	F	I	S	Y	L	G	R	L	N	E	P	L	I	E	L	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	G	E	D	D	A	I	P	E	L	S	H	A	G	D	V	S	T	T	L	Q	V	V	N	E	L	L	K	D	E	T	V	A	P	R	F	K	I	V	V	E	Y	I	A	A	I	G	A	D	L	I	D	E	R	I	I	D	Q	Q	A	W	F	T	H	I	T	P	Y	X	T	I	F	L	H	E	K	K	A	K
Template Known Secondary structure		T			G	G	G								T	T													T	T	T	S				G	G	G																	T	T			S								T					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	Q	A	M	L	Q	Q	A	V	V	A	G	E	R	V	F	E	L	M	D	G	P	R	Q	Q	Y	G	N	D	D	R	P	L	Q	S	G	T	I	E	V	D	N	V	S	F	A	Y	R	D	D	N	L	V	L	K	N	I	N	L	S	V	P	S	R	N	F	V	A	L	V	G	H	T	G	S	G	K	S	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.																													.
Template Conservation													.	.	.	.	.	.	.	.	.																													.
Template Sequence		D	I	L	D	E	F	R	K	R	A	V	.	.	.	.	.	.	.	.	.	D	N	I	P	V	G	P	N	F	D	D	E	E	D	E	G	E	D	L	C	N	C	E	F	S	L	A	Y	.	G	A	K	I	L	L	N	K	T	Q	L	R	L	K	R	A	R	R	Y	G	I	C	G	P	N	G	C	G	K	S	T
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	T	T	S									T	T	S	S														.	T	T													T	T								S	T	T	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.										.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		L	A	S	L	L	M	G	Y	Y	P	L	T	E	G	E	I	R	L	D	G	R	P	L	S	S	L	S	H	S	A	L	R	Q	G	V	A	M	V	Q	Q	D	P	.	.	V	V	L	A	D	T	F	L	A	N	V	T	L	G	R	D	I	S	E	E	R	V	W	Q	A	L	E	T	V	Q	L	A	E	L	A	R
Query Conservation																																												.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	X	R	A	I	A	N	G	Q	V	D	G	F	P	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	C	R	T	V	Y	V	E	H	D	I	D	G	T	H	S	D	T	S	V	L	D	F	V	F	E	S	G	V	G	T	K	E	A	I	K	D	K	L	I	E	F	G	F	T	D	E	X	I
Template Known Secondary structure								T	T		S	T	T				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S					T	T								T	T	S	B							T	T			S													T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.															.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	S	D	G	I	Y	T	P	L	G	E	Q	G	N	N	L	S	V	G	Q	K	Q	L	L	A	L	A	R	V	L	V	E	T	P	Q	I	L	I	L	D	E	A	T	A	S	I	D	S	G	T	E	Q	A	I	Q	H	A	L	A	A	V	R	E	H	T	T	L	V	V	I	A	H	R	L	S	T	I	V	D
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.																																																.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.																																																.	.
Template Sequence		A	X	P	I	S	.	.	.	.	.	.	.	.	.	.	A	L	S	G	G	W	K	X	K	L	A	L	A	R	A	V	L	R	N	A	D	I	L	L	L	D	E	P	T	N	H	L	D	T	V	N	V	A	W	L	V	N	Y	L	N	T	C	.	.	G	I	T	S	I	T	I	S	H	D	S	V	F	L	D	N
Template Known Secondary structure			S	B	G	G	.	.	.	.	.	.	.	.	.	.	G																	T	T		S						S	T	T	T	T																S	.	.		S							S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																																.	.
Template SS confidence
		537	.	.	540	.											.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.			.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
			541	.	.	.	.	.	.	.	.	550	.	.	.	.		.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure		.															.
Query SS confidence		.															.
Query Sequence		.	A	D	T	I	L	V	L	H	R	G	Q	A	V	E	.	Q	G	T	H	Q	Q	L	L	A	A	Q	G	R	Y	W	Q	M	Y	Q	L	Q	L	A	G	E	E
Query Conservation		.															.
Alig confidence		.															.
Template Conservation
Template Sequence		V	C	E	Y	I	I	N	Y	E	G	L	K	L	R	K	Y	K	G	N	F	T	E	F	V	K	K	C	P	A	A	K	A	Y	E	E	L	S	N	T	D	L	E
Template Known Secondary structure				S							T	T							S										G	G	G	G	G	T	T		S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.