Job Description P0AAG5 Confidence 97.66% Date Thu Jan 5 11:12:52 GMT 2012 Rank 92 Aligned Residues 200 % Identity 17% Template c1ewqA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution Resolution 2.20 Å

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		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		L	Y	A	F	I	S	Y	L	G	R	L	N	E	P	L	I	E	L	T	T	Q	Q	A	M	L	Q	Q	A	V	V	A	G	E	R	V	F	E	L	M	D	G	P	R	Q	Q	Y	G	N	D	D	R	P	L	Q	S	G	T	I	E	V	D	N	V	S	F	A	Y	R	D	.	.	D	N	L	V	L	K	N	I	N
Query Conservation																																																																							.	.
Alig confidence																																																									.	.													.	.
Template Conservation																																																									.	.
Template Sequence		R	R	R	E	E	E	V	F	L	E	V	R	E	R	A	K	R	Q	A	E	A	L	R	E	A	A	R	I	L	A	E	L	D	V	Y	A	A	L	A	E	V	A	V	R	Y	G	Y	V	R	P	R	F	G	D	R	.	.	L	Q	I	R	A	G	R	H	P	V	V	E	R	R	T	E	F	V	P	N	D	L	E
Template Known Secondary structure																		T	T																												T		B					S	S	S	.	.									T	T	G	G	G	T	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550			.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	P	S	R	N	F	V	A	L	V	G	H	T	G	S	G	K	S	T	L	A	S	L	L	M	G	Y	Y	P	L	T	E	G	E	I	R	L	D	G	R	P	L	S	S	L	S	H	S	A	L	R	Q	G	V	A	M	V	Q	Q	D	P	V	V	L	A	D	T	F	L	A	N	V	T	L	G	R	D	I
Query Conservation
Alig confidence				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	A	.	.	.	H	E	L	V	L	I	T	G	P	N	X	A	G	K	S	T	F	L	R	Q	T	A	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	A	Q	V	G	S	F	V	P	A	E	E	A	H	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	.	.	.	S							S		S	S	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T			B	S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		574	.				.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.																					600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	E	R	V	W	Q	A	L	E	T	V	Q	L	A	E	L	A	R	S	M	S	D	G	I	Y	T	P	L	G	E	Q	G	N	N	L	S	V	G	Q	K	Q	L	L	A	L	A	R	V	L	V	E	T	P	Q	I	L	I	L	D	E	A	T	A	S	I	D	S	G	T	E	Q	A	I	Q	H	A	L	A	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	D	G	I	Y	T	R	I	G	A	.	G	K	S	T	F	X	V	E	X	E	E	V	A	L	I	L	K	E	A	T	E	N	S	L	V	L	L	D	E	V	G	R	G	T	S	S	L	D	G	V	A	I	A	T	A	V	A	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S									.			S																		T	T							S	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
																						618	.	620	.	.	.	.	.	.	.	.		.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
		522	.			.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		V	R	.	.	E	H	T	T	L	V	V	I	A	H	R	L	S	T	I	V	D	A	D
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		A	L	H	E	R	R	A	Y	T	L	F	A	T	H	Y	F	E	L	T	A	L	G	L
Template Known Secondary structure							T														T
Template Predicted Secondary structure
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions