|   |
3 | . | . | . | . | . | . | 10 | . | . | |
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | K | V | A | A | I | Y | G | K | R | . |
D | V | R | L | R | V | F | E | L | P | E | I | T | D | N | E | L | L | V | S | V | I | S | D | S | V | C | L | S | T | W | K | A | A | L | L | G | S | E | H | K | R | V | P | D | D | L | E | N | H | P | V | I | T | G | H | E | C | A | G | V | I | V | E | V | G | K | N | L |
Query Conservation |   |
  |
|
|   |   |   |   |
|   |   | . |   |
|   |
|   |
|   |
|   |
|   |
|   |   |   |
|
|
|
|
|
|   |
|   |
|
|
|   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|
|   |
|
|
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |
|   |   |   |
|
|
|
|
|
|   |
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . |   |   |
|   |
|   |
|
|
|   |   |
|   |
|
|   |
|
|   |   |
|
Template Sequence |   |
I | K | A | V | G | A | Y | S | A | K | Q | P | L | E | P | M | D | I | T | R | R | E | P | G | P | N | D | V | K | I | E | I | A | Y | C | G | V | C | H | S | D | L | H | Q | V | R | S | E | W | A | G | T | . |
. |
. |
. |
. |
. |
. |
V | Y | P | C | V | P | G | H | E | I | V | G | R | V | V | A | V | G | D | Q | V |
Template Known Secondary structure |   |
|  |  |  |  | B | S | S | T | T | S |
|
|  |  |  |  |
|
|
|
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
| T | T | S |
|
| . | . | . | . | . | . | . |
| S | S | B |
|
|
|
|
|  |  |  |  |  |  |  |  |
| T | T |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
. | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |
|  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | G | K | Y | K | K | G | Q | R | F | V | L | Q | P | A | M | . |
G | L | P | S | G | Y | S | A | G | Y | S | Y | E | Y | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | G | N | A | T | Y | M | I | I | P | E | I | A | I | N | L | G | C | V | L | P | Y | H | G | S | Y | F | A |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   | . |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
Template Conservation |   |
  |   | . |   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |
|   | . | . | . | . |   |   |   |   |   |   |
|
|   | . | . |   |
|   |
Template Sequence |   |
E | K | . |
Y | A | P | G | D | L | V | G | V | G | C | I | V | D | S | C | K | H | C | E | E | C | E | D | G | L | E | N | Y | C | D | H | M | T | G | T | Y | N | S | P | T | P | D | E | P | G | H | T | L | G | G | Y | S | Q | Q | I | V | V | H | . |
. |
. |
. |
E | R | Y | V | L | R | I | R | V | . |
. |
A | D | I |
Template Known Secondary structure |   |
| S | . |
|
| T | T |
|  |  |  |  |
| S |  |  |  |
|
| S | S | S |  |  |  |  | T | T |
| G | G | G |
| T | T |
|  |  | T | T | T | S | B |
| S | S | T | T | S | B |
|
|
| S | S | B | S |  |  |  |  |  | . | . | . | . | G | G | G |
|  |  |
|
|
| . | . |
|
|  |
Template Predicted Secondary structure |   |
|
| . |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
| . | . | . | . |  |  |  |  |  |  |
|
|
| . | . |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
76 | . | |
. | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | |
|
|
|
. | . | . | 140 | . | . | . | . | . | |
|
. | . | . |
  |
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | S | L | A | E | P | M | C | C | I | I | G | A | Y | H | A | N |
Query Conservation |   |
  |
|
|
|   |
|
|
|   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
E | M | I | R | A | D | Q | I | N | E | A | Y | E | R | M | L | R | G |
Template Known Secondary structure |   |
 |  |  |
| G | G | G |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
317 | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
  |