Job Description P52048 Confidence 94.58% Date Thu Jan 5 12:05:00 GMT 2012 Rank 352 Aligned Residues 142 % Identity 13% Template c3q2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca Resolution 2.13 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	A	L	L	A	C	A	G	P	M	G	I	G	A	I	D	Y	A	I	N	G	G	I	Q	P	S	R	V	V	V	V	D	I	D	D	K	R	L	A	Q	V	Q	K	L	L	P	V	E	L	A	A	S	K	G	I	E	L	V	Y	V	N	T	K	G	M	S	D	P	V	Q	M	L	R	A	L	T	G	D	A
Query Conservation
Alig confidence							.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation							.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Sequence		R	F	G	L	V	.	G	C	G	R	I	S	K	N	H	I	G	A	I	A	Q	H	G	D	R	A	E	L	V	E	I	C	D	T	N	P	E	A	L	Q	A	A	E	A	A	T	G	A	R	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	L	S	D	M	L	A	Q	.	.	.	.	G
Template Known Secondary structure							.			S	T	T									T	T		T	T	T									S	S														B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								.	.	.	.
Template Predicted Secondary structure							.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template SS confidence
		12	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																.	.	.	.	.	.	.	.	70					.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.									.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.
Query Sequence		G	F	D	D	I	F	V	Y	A	A	V	P	A	V	V	E	M	A	D	E	L	L	A	E	D	G	C	L	N	F	F	A	G	P	T	D	K	N	F	K	V	P	F	N	F	Y	N	V	H	.	.	.	.	.	.	.	.	Y	N	S	T	H	V	V	G	T	S	G	G	S	T	D	D	M	K	E	A	I	A	L
Query Conservation																																																			.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.
Template Sequence		N	A	D	A	L	V	L	A	T	P	S	G	L	H	P	W	Q	A	I	E	V	A	Q	A	G	R	H	V	V	S	.	.	.	.	.	.	.	E	K	P	M	A	T	R	W	E	D	G	K	R	M	V	K	A	C	D	E	A	G	V	R	L	F	V	V	K	Q	N	R	R	N	A	T	L	Q	L	V	K	K	A
Template Known Secondary structure				S						S		G	G	G											T	T						.	.	.	.	.	.	.		S	S	S		S	S															T								G	G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	T	G	Q	L	Q	P	S	F	M	V	T	H	I	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	Q	G	R	F	G	R	I	Y	M	V	T	V	N	V	F
Template Known Secondary structure				T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions