Job Description P52048 Confidence 100.00% Date Thu Jan 5 12:05:00 GMT 2012 Rank 49 Aligned Residues 311 % Identity 20% Template c3jynA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structures of pseudomonas syringae pv. tomato dc30002 quinone oxidoreductase complexed with nadph Resolution 2.01 Å

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		3	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		T	K	V	A	A	I	Y	.	.	.	G	K	R	D	V	R	L	R	V	F	E	L	P	E	I	T	D	N	E	L	L	V	S	V	I	S	D	S	V	C	L	S	T	W	K	A	A	L	L	G	S	E	H	K	R	V	P	D	D	L	E	N	H	P	V	I	T	G	H	E	C	A	G	V	I	V	E	V	G	K
Query Conservation									.	.	.
Alig confidence									.	.	.																																													.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		A	K	R	I	Q	F	S	T	V	G	G	P	E	V	L	E	Y	V	D	F	E	P	E	A	P	G	P	Q	A	V	V	V	R	N	K	A	I	G	L	N	F	I	D	T	Y	Y	R	S	G	L	Y	P	A	P	.	.	.	.	.	.	.	F	L	P	S	G	L	G	A	E	G	A	G	V	V	E	A	V	G	D
Template Known Secondary structure							B	S	S		S	S	G	G	G													T	T																					T	S	S			S	.	.	.	.	.	.	.	S	S	S	B															T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	T	G	K	Y	K	K	G	Q	R	F	V	L	Q	P	A	M	G	L	P	S	G	Y	S	A	G	Y	S	Y	E	Y	F	G	G	N	A	T	Y	M	I	I	P	E	I	A	I	N	L	G	C	V	L	P	Y	H	G	S	Y	F	A	A	A	S	L	A	E	P	M	C	C	I	I	G	A	Y	H	A	N	Y
Query Conservation
Alig confidence						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	T	R	.	F	K	V	G	D	R	V	A	Y	G	T	G	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	Y	S	E	V	H	V	L	P	.	.	.	.	E	A	N	L	V	K	L	A	D	S	V	S	F	E	Q	A	A	.	.	.	.	.	.	.	.	.	.	A	L	M	L	K	G
Template Known Secondary structure		T			S	.			T	T						S	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	B	S						.	.	.	.	G	G	G						T	T	S							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.															.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.											120	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	T	Q	Y	V	Y	E	H	R	M	G	V	K	P	G	G	N	I	A	L	L	A	C	A	G	P	M	G	I	G	A	I	D	Y	A	I	N	G	G	I	Q	P	S	R	V	V	V	V	D	I	D	D	K	R	L	A	Q	V	Q	K	L	L	P	V	E	L	A	A	S	K	G	I	E	L	V	Y	V	N	T
Query Conservation
Alig confidence																																										.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	Q	Y	L	L	R	Q	T	Y	Q	V	K	P	G	E	I	I	L	F	H	A	A	A	G	G	V	G	S	L	A	C	Q	W	A	K	A	L	G	.	.	.	A	K	L	I	G	T	V	S	S	P	E	K	A	A	H	A	K	A	L	G	A	W	E	T	I	D	Y	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S				T	T						S	S	T	T	S														T	.	.	.								S	S											T		S					T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	G	M	S	D	P	V	Q	M	L	R	A	L	T	G	D	A	G	F	D	D	I	F	V	Y	A	A	V	P	A	V	V	E	M	A	D	E	L	L	A	E	D	G	C	L	N	F	F	A	G	P	T	D	K	N	F	K	V	P	F	N	F	Y	N	V	H	Y	N	S	T	H	V	V	G	T	S	G	G	S	.
Query Conservation																																																																																	.
Alig confidence		.																.																																							.	.																							.
Template Conservation		.																.																																							.	.
Template Sequence		.	S	H	E	D	V	A	K	R	V	L	E	L	T	D	G	.	K	K	C	P	V	V	Y	D	G	V	G	Q	D	T	W	L	T	S	L	D	S	V	A	P	R	G	L	V	V	S	F	G	N	A	S	G	P	V	.	.	S	G	V	N	L	G	I	L	A	Q	K	D	S	V	Y	V	T	R	P	T	L	G	S
Template Known Secondary structure		.	T	T	S										T	T	T	.									S	S		G	G	G						T	T													T	T				.	.		S			T						T	T	S
Template Predicted Secondary structure		.																.																																							.	.
Template SS confidence
			193	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
										319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																												.
Query SS confidence		.	.	.	.	.	.	.	.																																												.
Query Sequence		.	.	.	.	.	.	.	.	T	D	D	M	K	E	A	I	A	L	S	A	T	G	Q	L	Q	P	S	F	M	V	T	H	I	G	G	L	D	A	V	P	E	T	V	L	N	L	P	D	I	P	G	.	G	K	K	L	I	Y	N
Query Conservation		.	.	.	.	.	.	.	.																																												.
Alig confidence		.	.	.	.	.	.	.	.																			.	.																								.
Template Conservation																												.	.
Template Sequence		Y	A	N	N	A	Q	N	L	Q	T	M	A	D	E	L	F	D	M	L	A	S	G	K	L	K	V	.	.	D	G	I	E	Q	Y	A	L	K	D	A	A	K	A	Q	I	E	L	S	A	R	R	T	T	G	S	T	I	L	I	P
Template Known Secondary structure			S		S	T	T															T	T	S	S			.	.								G	G	G										T	T				S
Template Predicted Secondary structure																												.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions