Job Description P52048 Confidence 100.00% Date Thu Jan 5 12:05:00 GMT 2012 Rank 16 Aligned Residues 331 % Identity 13% Template c3iupB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadph:quinone oxidoreductase; PDBTitle: crystal structure of putative nadph:quinone oxidoreductase2 (yp_296108.1) from ralstonia eutropha jmp134 at 1.70 a resolution Resolution 1.70 Å

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		1	.	.	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		M	K	T	K	V	.	A	A	I	Y	G	K	R	D	V	R	L	R	V	F	E	L	P	E	I	T	D	N	E	L	L	V	S	V	I	S	D	S	V	C	L	S	T	W	K	A	A	L	L	G	S	E	H	K	R	V	P	D	D	L	E	N	H	P	V	I	T	G	H	E	C	A	G	V	I	V	E	V	G	K
Query Conservation							.
Alig confidence							.																																													.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.
Template Sequence		L	Q	L	R	S	R	I	K	S	S	G	E	L	E	L	S	L	D	S	I	D	T	P	H	P	G	P	D	E	V	L	I	R	I	E	A	S	P	L	N	P	S	D	L	G	L	L	F	G	A	.	.	.	.	.	.	.	A	D	X	S	T	A	K	A	S	G	T	A	E	R	P	I	V	T	A	R	V	P	E
Template Known Secondary structure										T	T	S																T	T																					T	T	.	.	.	.	.	.	.												S	S	S									G
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.															.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	T	G	K	Y	K	K	G	Q	R	F	V	L	Q	P	A	M	G	L	P	S	G	Y	S	A	G	Y	S	Y	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	G	N	A	T	Y	M	I	I	P	E	I	A	I	N	L	G	C	V	L	P	Y	H	G	S	Y	F	A	A	A	S	L	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																		.	.
Template Conservation						.																																																					.	.	.	.																		.	.
Template Sequence		G	A	X	R	.	S	X	A	G	R	L	D	A	S	X	P	V	G	N	E	G	A	G	V	V	V	E	A	G	S	S	P	A	A	Q	A	L	X	G	K	T	V	A	A	I	G	G	A	X	Y	S	Q	Y	R	C	I	P	.	.	.	.	A	D	Q	C	L	V	L	P	E	G	A	T	P	A	D	G	A	.	.
Template Known Secondary structure		G	G	G	G	.	G	G	G	G	G	T	T							S											S	S					T	T	T	T								S			S	B	S						.	.	.	.	G	G	G						T	T							T	.	.
Template Predicted Secondary structure						.																																																					.	.	.	.																		.	.
Template SS confidence
		78	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	M	C	C	I	I	G	A	Y	H	A	N	Y	H	T	T	Q	Y	V	Y	E	H	R	M	G	V	K	P	G	G	N	I	A	L	L	A	C	A	G	P	M	G	I	G	A	I	D	Y	A	I	N	G	G	I	Q	P	S	R	V	V	V	V	D	I	D	D	K	R	L	A	Q	V	Q	K	L	L	P	V	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.										.																																					.	.	.
Template Conservation		.	.	.	.	.	.	.	.										.																																					.	.	.
Template Sequence		.	.	.	.	.	.	.	.	S	S	F	V	N	P	L	T	A	.	L	G	X	V	E	T	X	R	L	E	G	H	S	A	L	V	H	T	A	A	A	S	N	L	G	Q	X	L	N	Q	I	C	L	K	D	G	.	.	.	I	K	L	V	N	I	V	R	K	Q	E	Q	A	D	L	L	K	A	Q	G	A	V	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	S	S							.										T	T		S					S	S	T	T	S														T	.	.	.								S	S										T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.										.																																					.	.	.
Template SS confidence
										151	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	A	S	K	G	I	E	L	V	Y	V	N	T	K	G	M	S	D	P	V	Q	M	L	R	A	L	T	G	D	A	G	F	D	D	I	F	V	Y	A	A	V	P	A	V	V	E	M	A	D	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	E	D	G	C	L	N	F	F	A	G
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	N	A	.	.	.	.	.	.	.	.	.	.	.	A	S	P	T	F	X	Q	D	L	T	E	A	L	V	S	T	G	A	T	I	A	F	D	A	T	G	G	G	K	L	G	G	Q	I	L	T	C	X	E	A	A	L	N	K	S	A	R	E	Y	S	R	Y	G	S	T	T	H	K	Q	V	Y	L	Y	G	G
Template Known Secondary structure					T	.	.	.	.	.	.	.	.	.	.	.	T	S	T	T																				S					S																T			S			T	T			S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.												.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																														.	.	.	.	.																																	.	.													.
Query SS confidence																														.	.	.	.	.																																	.	.													.
Query Sequence		P	T	D	K	N	F	K	V	P	F	N	F	Y	N	V	H	Y	N	S	T	H	V	V	G	T	S	G	G	.	.	.	.	.	S	T	D	D	M	K	E	A	I	A	L	S	A	T	G	Q	L	Q	P	S	F	M	V	T	H	I	G	G	L	D	A	V	.	.	P	E	T	V	L	N	L	P	D	I	P	G	.
Query Conservation																														.	.	.	.	.																																	.	.													.
Alig confidence																														.	.	.	.	.																					.	.											.	.													.
Template Conservation																																																							.	.
Template Sequence		L	D	T	S	P	T	E	F	N	R	N	F	G	X	A	W	G	X	G	G	W	L	L	F	P	F	L	Q	K	I	G	R	E	R	A	N	A	L	K	Q	R	V	V	A	E	L	K	T	T	F	A	S	H	.	.	Y	S	K	E	I	S	L	A	E	V	L	D	L	D	X	I	A	V	Y	N	K	R	A	T	G
Template Known Secondary structure		S											S		S																															T	T	T	T	T	T				.	.		S									T									T	T			T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		362	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	K	L	I	Y	N	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	Y	L	I	N	P	N	K
Template Known Secondary structure								T	T	T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions