Job Description P52048 Confidence 94.50% Date Thu Jan 5 12:05:00 GMT 2012 Rank 355 Aligned Residues 105 % Identity 15% Template c2frxD_ PDB info PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli Resolution 2.90 Å

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		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	G	V	K	P	G	G	N	I	A	L	L	A	C	A	G	P	M	G	I	G	A	I	D	Y	A	I	N	G	G	I	Q	P	S	R	V	V	V	V	D	I	D	D	K	R	L	A	Q	V	Q	K	L	L	P	V	E	L	A	A	S	K	G	I	E	L	V	Y	V	N	T	K	G	M	S	D	P	V	Q	M
Query Conservation
Alig confidence															.								.										.																				.	.	.	.	.
Template Conservation															.								.										.																				.	.	.	.	.
Template Sequence		F	A	D	G	N	A	P	Q	R	V	X	D	V	.	A	A	A	P	G	S	K	.	T	T	Q	I	S	A	R	X	N	.	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	.	.	.	.	.	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	F	D	G	R	V	F	G	A	A
Template Known Secondary structure			T	T	T				S					S	.	S		T	T	S			.								T	T	.	T		S							S	S									.	.	.	.	.							T			S								S	T	T
Template Predicted Secondary structure															.								.										.																				.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																													.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	A	L	T	G	D	A	G	F	D	D	I	F	V	Y	A	A	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	V	E	M	A	D	E	L	L	A	E	D	G	C	L	N	F
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		V	.	.	.	.	.	P	E	X	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y
Template Known Secondary structure		S	.	.	.	.	.	T	T														G	G	G	G	G	T		T	T	S	S	S	S																							T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		184						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions