Job Description P52048 Confidence 100.00% Date Thu Jan 5 12:05:00 GMT 2012 Rank 28 Aligned Residues 315 % Identity 14% Template c1y9eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		M	K	T	K	V	A	A	I	Y	.	.	.	G	K	R	D	V	R	L	R	V	F	E	L	P	E	I	T	D	N	E	L	L	V	S	V	I	S	D	S	V	C	L	S	T	W	K	A	A	L	L	G	S	E	H	K	R	V	P	D	D	L	E	N	H	P	V	I	T	G	H	E	C	A	G	V	I	V	E	V
Query Conservation											.	.	.
Alig confidence			.								.	.	.																																									.	.	.	.	.	.
Template Conservation			.																																																			.	.	.	.	.	.
Template Sequence		L	.	F	Q	A	L	Q	A	E	K	N	A	D	D	V	S	V	H	V	K	T	I	S	T	E	D	L	P	K	D	G	V	L	I	K	V	A	Y	S	G	I	N	Y	K	D	G	L	A	G	K	A	G	.	.	.	.	.	.	G	N	I	V	R	E	Y	P	L	I	L	G	I	D	A	A	G	T	V	V	S	S
Template Known Secondary structure			.			B							T	T					B						G	G	G	S		S	S	S																			S	T	T	.	.	.	.	.	.		S				S	S						S								S
Template Predicted Secondary structure			.																																																			.	.	.	.	.	.
Template SS confidence
		4		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	N	L	T	G	K	Y	K	K	G	Q	R	F	V	L	Q	P	A	M	G	L	P	S	G	Y	S	A	G	Y	S	Y	E	Y	F	G	G	N	A	T	Y	M	I	I	P	E	I	A	I	N	L	G	C	V	L	P	Y	H	G	S	Y	F	A	A	A	S	L	A	E	P	M	C	C	I	I	G	A	Y	H	A
Query Conservation
Alig confidence				.	.	.																								.	.	.	.	.	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Template Conservation				.	.	.																								.	.	.	.	.	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		N	D	.	.	.	P	R	F	A	E	G	D	E	V	I	A	T	S	Y	E	L	G	V	S	R	D	G	G	.	.	.	.	.	.	.	.	.	L	S	E	Y	A	S	V	P	.	.	.	.	G	D	W	L	V	P	L	P	Q	N	L	S	L	K	E	A	X	V	.	.	.	.	.	.	.	Y	G	T	A	G	F
Template Known Secondary structure		S		.	.	.	T	T			T	T							S	T	T	B	T	T	T	B			S	.	.	.	.	.	.	.	.	.	S	B	S						.	.	.	.	G	G	G						T	T									.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.																								.	.	.	.	.	.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		77	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	H	T	T	Q	Y	V	Y	E	H	R	M	G	V	K	P	G	G	N	I	A	L	L	A	C	A	G	P	M	G	I	G	A	I	D	Y	A	I	N	G	G	I	Q	P	S	R	V	V	V	V	D	I	D	D	K	R	L	A	Q	V	Q	K	L	L	P	V	E	L	A	A	S	K	G	I	E	L	V	Y	V
Query Conservation
Alig confidence																																												.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.																												.	.	.	.	.	.	.	.
Template Sequence		T	A	A	L	S	V	H	R	L	E	Q	N	G	L	S	P	E	K	G	S	V	L	V	T	G	A	T	G	G	V	G	G	I	A	V	S	X	L	N	K	R	G	.	.	.	Y	D	V	V	A	S	T	G	N	R	E	A	A	D	Y	L	K	Q	L	G	A	S	E	V	I	S	R	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	T			T	T	S						S	S	T	T	S													T	T	.	.	.								S		T	T	T							T	T		S						.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.																												.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	K	G	M	S	D	P	V	Q	M	L	R	A	L	T	G	D	A	G	F	D	D	I	F	V	Y	A	A	V	P	A	V	V	E	M	A	D	E	L	L	A	E	D	G	C	L	N	F	F	A	G	P	T	D	K	N	F	K	V	P	F	N	F	Y	N	V	H	Y	N	S	T	H	V	V	G	T	S	G	G
Query Conservation
Alig confidence		.	.	.	.	.																											.																										.	.
Template Conservation		.	.	.	.	.																											.																										.	.
Template Sequence		.	.	.	.	.	E	D	V	Y	D	G	T	L	K	A	L	S	K	Q	Q	W	Q	G	A	V	D	P	V	G	G	K	.	Q	L	A	S	L	L	S	K	I	Q	Y	G	G	S	V	A	V	S	G	L	T	G	G	G	E	.	.	V	P	A	T	V	Y	P	F	I	L	R	G	V	S	L	L	G	I	D	S	V
Template Known Secondary structure		.	.	.	.	.				S	S	S				S	S						S					S					.							T	T			T	T									T	T		S		.	.					S															S	T
Template Predicted Secondary structure		.	.	.	.	.																											.																										.	.
Template SS confidence
							203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		318							.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																																												.
Query SS confidence			.	.	.	.	.	.																																												.
Query Sequence		S	.	.	.	.	.	.	T	D	D	M	K	E	A	I	A	L	S	A	T	G	Q	L	Q	P	S	F	M	V	T	H	I	G	G	L	D	A	V	P	E	T	V	L	N	L	P	D	I	P	G	.	G	K	K	L	I
Query Conservation			.	.	.	.	.	.																																												.
Alig confidence			.	.	.	.	.	.																			.	.																								.
Template Conservation																											.	.
Template Sequence		Y	C	P	X	D	V	R	A	A	V	W	E	R	X	S	S	D	L	K	P	D	Q	L	L	T	.	.	I	V	D	R	E	V	S	L	E	E	T	P	G	A	L	K	D	I	L	Q	N	R	I	Q	G	R	V	I	V
Template Known Secondary structure		T													T	T	T	T	T			S		S	G	G	.	.	G							S	T	T								S	S	S	S			S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions