Job Description P52048 Confidence 100.00% Date Thu Jan 5 12:05:00 GMT 2012 Rank 15 Aligned Residues 329 % Identity 17% Template c1p0fA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: crystal structure of the binary complex: nadp(h)-dependent vertebrate2 alcohol dehydrogenase (adh8) with the cofactor nadp Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		M	K	T	K	V	A	A	I	Y	G	K	R	D	.	V	R	L	R	V	F	E	L	P	E	I	T	D	N	E	L	L	V	S	V	I	S	D	S	V	C	L	S	T	W	K	A	A	L	L	G	S	E	H	K	R	V	P	D	D	L	E	N	H	P	V	I	T	G	H	E	C	A	G	V	I	V	E	V	G	K
Query Conservation															.
Alig confidence															.																																								.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.
Template Sequence		I	T	C	K	A	A	V	A	W	E	P	H	K	P	L	S	L	E	T	I	T	V	A	P	P	K	A	H	E	V	R	I	K	I	L	A	S	G	I	C	G	S	D	S	S	V	L	K	E	I	I	P	S	.	.	.	.	.	.	.	.	K	F	P	V	I	L	G	H	E	A	V	G	V	V	E	S	I	G	A
Template Known Secondary structure									B	S	S	T	T	S														T	T																				T	T	S	S			.	.	.	.	.	.	.	.		S	S	B															T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.
Template SS confidence
		1007	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.									1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																																		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	T	G	K	Y	K	K	G	Q	R	F	V	L	Q	P	A	M	G	L	P	S	G	Y	S	A	G	Y	S	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	G	G	N	A	T	Y	M	I	I	P	E	I	A	I
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation						.																																																																								.	.	.	.
Template Sequence		G	V	T	C	.	V	K	P	G	D	K	V	I	P	L	F	V	P	Q	C	G	S	C	R	A	C	K	S	S	N	S	N	F	C	E	K	N	D	M	G	A	K	T	G	L	M	A	D	M	T	S	R	F	T	C	R	G	K	P	I	Y	N	L	M	G	T	S	T	F	T	E	Y	T	V	V	A	.	.	.	.
Template Known Secondary structure		T			S	.			T	T							S	S				S	S	S						T	T					T	T		S	T	T	T				S		T	T	S			S				T	T				B		S	T	T	T			S	B	S						.	.	.	.
Template Predicted Secondary structure						.																																																																								.	.	.	.
Template SS confidence
		1079	1080	.	.		.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	G	C	V	L	P	Y	H	G	S	Y	F	A	A	A	S	L	A	E	P	M	C	C	I	I	G	A	Y	H	A	N	Y	H	T	T	Q	Y	V	Y	E	H	R	M	G	V	K	P	G	G	N	I	A	L	L	A	C	A	G	P	M	G	I	G	A	I	D	Y	A	I	N	G	G	I	Q	P	S	R	V	V
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Sequence		D	I	A	V	A	K	I	D	P	K	A	P	L	E	S	C	L	I	G	C	G	F	A	T	G	Y	G	A	A	V	.	.	.	.	.	.	.	.	.	.	.	.	N	T	A	K	V	T	P	G	S	T	C	A	V	F	G	L	G	G	V	G	F	S	A	I	V	G	C	K	A	A	G	A	.	.	S	R	I	I
Template Known Secondary structure		T	T	S						T	T			G	G	G	G	G	G	G	T											.	.	.	.	.	.	.	.	.	.	.	.	T	T	T				T	T									S														T		.	.	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template SS confidence
		1154	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.													.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.			.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	D	I	D	D	K	R	L	A	Q	V	Q	K	L	L	P	V	E	L	A	A	S	K	G	I	E	L	V	Y	V	N	T	K	G	M	S	D	P	V	Q	M	L	R	A	L	T	G	D	A	G	F	D	D	I	F	V	Y	A	A	V	P	A	V	V	E	M	A	D	E	L	L	A	E	D	G	C	L	N	F
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.																						.
Template Conservation																					.	.	.	.	.	.	.	.	.																						.
Template Sequence		G	V	G	T	H	K	D	K	F	P	K	A	I	E	L	G	A	T	E	.	.	.	.	.	.	.	.	.	C	L	N	P	K	D	Y	D	K	P	I	Y	E	V	I	C	E	K	T	N	G	.	G	V	D	Y	A	V	E	C	A	G	R	I	E	T	M	M	N	A	L	Q	S	T	Y	C	G	S	G	V	T	V
Template Known Secondary structure					S		G	G	G							T	T		S		.	.	.	.	.	.	.	.	.				G	G	G		S	S										T	T	S	.		B	S						S												T	B		T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.										.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.		1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.
Predicted Secondary structure																															.	.																																															.
Query SS confidence																															.	.																																															.
Query Sequence		F	A	G	P	T	D	K	N	F	K	V	P	F	N	F	Y	N	V	H	Y	N	S	T	H	V	V	G	T	S	.	.	G	G	S	T	D	D	M	K	E	A	I	A	L	S	A	T	G	Q	L	Q	P	S	F	M	V	T	H	I	G	G	L	D	A	V	P	E	T	V	L	N	L	P	D	I	P	G	.	G	K
Query Conservation																															.	.																																															.
Alig confidence																.															.	.																																															.
Template Conservation																.
Template Sequence		V	L	G	L	A	S	P	N	E	R	L	P	L	D	.	P	L	L	L	L	T	G	R	S	L	K	G	S	V	F	G	G	F	K	G	E	E	V	S	R	L	V	D	D	Y	M	K	K	K	I	N	V	N	F	L	V	S	T	K	L	T	L	D	Q	I	N	K	A	F	E	L	L	S	S	G	Q	G	V	R	S
Template Known Secondary structure								T	T							.	T					T	T							S	G	G	G			G	G	G										T	T	S	S		G	G	G	G							G	G	G								T	T	T	S	S		S
Template Predicted Secondary structure																.
Template SS confidence
		1290	.	.	.	.	.	.	.	.	.	1300	.	.	.		.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.
		364	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	M	I	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1369	1370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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