Job Description P23909 Confidence 100.00% Date Thu Jan 5 11:40:34 GMT 2012 Rank 2 Aligned Residues 799 % Identity 26% Template c3thxB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp Resolution 2.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	H	T	P	M	M	Q	Q	Y	L	R	L	K	A	Q	H	P	E	I	L	L	F	Y	R	M	G	D	F	Y	E	L	F	Y	D	D	A	K	R	A	S	Q	L	L	D	I	S	L	T	K	R	G	A	S	A	G	E	P	I	P	M	A	G	I	P	Y	H	A	V	E	N	Y	L	A	K	L	V	N	Q
Query Conservation
Alig confidence																																																							.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		K	S	I	Y	T	P	L	E	L	Q	Y	I	E	M	K	Q	Q	H	K	D	A	V	L	C	V	E	C	G	Y	K	Y	R	F	F	G	E	D	A	E	I	A	A	R	E	L	N	I	Y	C	H	L	D	H	.	.	.	.	.	N	F	M	T	A	S	I	P	T	H	R	L	F	V	H	V	R	R	L	V	A	K
Template Known Secondary structure			T	T	S												T	T	T	T	T	S							S	S																	T							T	.	.	.	.	.	T								G	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.														.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		G	E	S	V	A	I	C	E	Q	I	G	D	P	A	.	.	.	.	.	.	T	S	K	G	P	V	E	R	K	V	V	R	I	V	T	P	G	T	I	S	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	Q	E	R	Q	D	N	L	L	A	A	I	W	Q	D	S	K	G	.	F	G	Y	A
Query Conservation																.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		G	Y	K	V	G	V	V	K	Q	T	E	T	A	A	L	K	A	I	G	D	N	R	S	S	L	F	S	R	K	L	T	A	L	Y	T	K	S	T	L	I	G	E	D	V	N	P	L	I	K	L	A	V	N	V	D	E	I	M	T	D	T	S	T	S	Y	L	L	C	I	S	E	N	K	N	I	F	I	G	I	V
Template Known Secondary structure		T										S						T	T	S	T	T		S	S												T	T				S	T	T	T														S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.												.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	D	I	S	S	G	R	F	R	L	S	E	P	A	D	R	.	.	.	E	T	M	A	A	E	L	Q	R	T	N	P	A	E	L	L	Y	A	E	D	F	A	E	M	S	L	I	E	G	R	R	.	.	.	.	.	.	.	.	.	.	.	G	L	R	R	R	P	L	W	E	F	E	I	D	T	A	R	Q	Q
Query Conservation																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	Q	P	A	T	G	E	V	V	F	D	S	F	Q	D	S	A	S	R	S	E	L	E	T	R	M	S	S	L	Q	P	V	E	L	L	L	P	S	A	L	S	E	Q	T	E	A	L	I	H	R	A	T	S	V	S	V	Q	D	D	R	I	R	V	E	R	M	D	N	I	Y	F	E	Y	S	H	A	F	Q	A
Template Known Secondary structure					T	T	T	T											T	T														S						S	S															S	S		S	S	S									G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																															.	.																												.
Query SS confidence																																															.	.																												.
Query Sequence		L	N	L	Q	F	G	T	R	D	L	V	G	F	G	V	E	N	A	P	R	G	L	C	A	A	G	C	L	L	Q	Y	A	K	D	T	Q	R	T	T	L	P	H	I	R	S	.	.	I	T	M	E	R	E	Q	D	S	I	I	M	D	A	A	T	R	R	N	L	E	I	T	Q	N	L	A	.	G	G	A	E	N
Query Conservation																																															.	.																												.
Alig confidence												.	.	.	.	.	.	.																													.	.																												.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		V	T	E	F	Y	A	I	V	N	L	.	.	.	.	.	.	.	E	K	P	V	I	C	S	L	A	A	I	I	K	Y	L	K	E	F	N	L	E	K	M	L	S	K	P	E	N	F	K	Q	L	S	S	K	M	E	F	M	T	I	N	G	T	T	L	R	N	L	E	I	L	Q	N	Q	T	D	M	K	T	K	G
Template Known Secondary structure												.	.	.	.	.	.	.																		T	T		G	G	G	G	S		G	G	G				S			T	T	T	B											T	T	S	S	S		T	T	T		S	S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.								.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		T	L	A	S	V	L	D	C	T	V	T	P	M	G	S	R	M	L	K	R	W	L	H	M	P	V	R	D	T	R	V	L	L	E	R	Q	Q	T	I	G	A	L	Q	.	.	.	.	D	F	T	A	G	L	Q	P	V	L	R	Q	V	G	D	L	E	R	I	L	A	R	L	A	L	R	T	A	R	P	R	D	L
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.
Template Conservation
Template Sequence		S	L	L	W	V	L	D	H	T	K	T	S	F	G	R	R	K	L	K	K	W	V	T	Q	P	L	L	K	L	R	E	I	N	A	R	L	D	A	V	S	E	V	L	H	S	E	S	S	V	F	G	Q	I	E	N	H	L	R	K	L	P	D	I	E	R	G	L	C	S	I	Y	H	K	K	C	S	T	Q	E	F
Template Known Secondary structure		S									S	S													S		B																		S				T								T	T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.						.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																																																	.
Query SS confidence																			.	.	.	.	.																																																	.
Query Sequence		A	R	M	R	H	A	F	Q	Q	L	P	E	L	R	A	Q	L	.	.	.	.	.	E	T	V	D	S	A	P	V	Q	A	L	R	E	K	M	G	E	F	A	E	L	R	D	L	L	E	R	A	I	I	D	T	P	P	V	L	V	R	D	G	G	V	I	A	S	G	Y	N	.	E	E	L	D	E	W	R	A	L
Query Conservation																			.	.	.	.	.																																																	.
Alig confidence																			.	.	.	.	.																																																	.
Template Conservation
Template Sequence		F	L	I	V	K	T	L	Y	H	L	K	S	E	F	Q	A	I	I	P	A	V	N	S	H	I	Q	S	D	L	L	R	T	V	I	L	E	I	P	E	L	L	S	P	V	E	H	Y	L	K	I	L	N	E	Q	A	A	K	V	G	D	K	T	E	L	F	K	D	L	S	D	F	P	L	I	K	K	R	K	D	E
Template Known Secondary structure																									T											T						T	G	G	G					T	T	S								T		S	T	T	S		S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	G	A	T	D	Y	L	E	R	L	E	V	R	E	R	E	R	T	G	L	D	T	L	K	V	G	F	N	A	V	H	G	Y	Y	I	Q	I	S	R	G	Q	S	H	L	A	P	I	N	Y	M	R	R	Q	T	L	K	N	A	E	R	Y	I	I	P	E	L	K	E	Y	E	D	K	V	L	T	S	K	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	G	V	I	D	E	I	R	M	H	L	Q	E	I	R	K	I	L	K	N	P	S	A	Q	Y	V	T	V	S	G	Q	E	F	M	I	E	I	K	N	S	A	V	S	C	I	P	T	D	W	V	K	V	G	S	T	K	A	V	S	R	F	H	S	P	F	I	V	E	N	Y	R	H	L	N	Q	L	R	E	Q
Template Known Secondary structure																					T		T	T							T	T									T	T	S	G	G	G	S		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		A	L	A	L	E	K	Q	L	Y	E	E	L	F	D	L	L	L	P	H	L	E	A	L	Q	Q	S	A	S	A	L	A	E	L	D	V	L	V	N	L	A	E	R	A	Y	T	L	N	Y	T	C	P	T	F	I	D	K	P	G	I	R	I	T	E	G	R	H	P	V	V	E	Q	V	L	.	.	N	E	P	F	I
Query Conservation																																																																											.	.
Alig confidence																																																																											.	.
Template Conservation
Template Sequence		L	V	L	D	C	S	A	E	W	L	D	F	L	E	K	F	S	E	H	Y	H	S	L	C	K	A	V	H	H	L	A	T	V	D	C	I	F	S	L	A	K	V	A	K	Q	G	D	Y	C	R	P	T	V	Q	E	E	R	K	I	V	I	K	N	G	R	H	P	V	I	D	V	L	L	G	E	Q	D	Q	Y	V
Template Known Secondary structure																		G	G	G																									T	S	S	S		B						S	S																	T		S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
		598	.	600	.	.	.	.	.	.		.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		A	N	P	L	N	L	S	P	Q	.	R	R	M	L	I	I	T	G	P	N	M	G	G	K	S	T	Y	M	R	Q	T	A	L	I	A	L	M	A	Y	I	G	S	Y	V	P	A	Q	K	V	E	I	G	P	I	D	R	I	F	T	R	V	G	A	A	D	D	L	A	S	G	R	S	T	F	M	V	E	M	T	E
Query Conservation											.
Alig confidence											.																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	N	T	D	L	S	E	D	S	E	R	V	M	I	I	T	G	P	N	M	G	G	K	S	S	Y	I	K	Q	V	A	L	I	T	I	M	A	Q	I	G	S	Y	V	P	A	E	E	A	T	I	G	I	V	D	G	I	F	T	R	M	.	.	.	.	.	.	.	.	.	.	S	T	F	M	E	E	L	T	D
Template Known Secondary structure									T	T	S								S																							T			B	S	S	S								S							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930											.	.	.	.	.	.	.	.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.		.	.	.	.	.	.	.	.	750	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		T	A	N	I	L	H	N	A	T	E	Y	S	L	V	L	M	D	E	I	G	R	G	T	S	T	Y	D	G	L	S	L	A	W	A	C	A	E	N	L	A	N	K	I	K	A	L	T	L	F	A	T	H	Y	F	E	L	T	Q	L	P	E	K	M	E	G	.	V	A	N	V	H	L	D	A	L	E	H	G	D	T
Query Conservation																																																																			.
Alig confidence																																																																			.												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		T	A	E	I	I	R	K	A	T	S	Q	S	L	V	I	L	D	E	L	G	R	G	T	S	T	H	D	G	I	A	I	A	Y	A	T	L	E	Y	F	I	R	D	V	K	S	L	T	L	F	V	T	H	Y	P	P	V	C	E	L	E	K	N	Y	S	H	Q	V	G	N	Y	H	M	G	F	L	V	S	.	.	.
Template Known Secondary structure											T	T							S	T	T	T	T	S																			T	T									S		G	G	G	G	G					T	T	T	T												.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.
		756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	F	M	H	S	V	Q	D	G	A	A	S	K	S	Y	G	L	A	V	A	A	L	A	G	V	P	K	E	V	I	K	R	A	R	Q	K	L	R	E	L	E	S	I	S	P	N	A	A	A	T	Q	V	D	G	T	Q	M	S	L	L	S	V	P	E	E	T	S	P	A	V	E	A	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	F	L	Y	Q	I	T	R	G	I	A	A	R	S	Y	G	L	N	V	A	K	L	A	D	V	P	G	E	I	L	K	K	A	A	H	K	S	K	E	L	E	G	L	I	N	T	K	R	K	R	L	K	Y	F	A	K	L	W	T	M	H	N	A	Q	D	L	Q	K	W	T	E	E	F	N
Template Known Secondary structure											S				T	T	T	T					T	T	T	T																																			T			S
Template Predicted Secondary structure
Template SS confidence
		1044	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.