Job Description P23909 Confidence 95.54% Date Thu Jan 5 11:40:34 GMT 2012 Rank 138 Aligned Residues 108 % Identity 16% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Q	R	R	M	L	I	I	T	G	P	N	M	G	G	K	S	T	Y	M	R	Q	T	A	L	I	A	L	M	A	Y	I	G	S	Y	V	P	A	Q	K	V	E	I	G	P	I	D	R	I	F	T	R	V	G	A	A	D	D	L	A	S	G	R	S	T	F	M	V	E	M	T	E	T	A	N	I	L	H	N
Query Conservation
Alig confidence																											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	.	.	.	.	.	T	E	A	N	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	S	V	S	S	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E
Template Known Secondary structure													S	T	T	S											.	.	.	.	.		T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	S	S	S	S		T	T	T										T
Template Predicted Secondary structure																											.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		684	.	.	.	.	.	690	.	.	.	.	.							.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.					.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure														.	.	.	.	.	.																						.	.	.	.
Query SS confidence														.	.	.	.	.	.																						.	.	.	.
Query Sequence		A	T	E	Y	S	L	V	L	M	D	E	I	.	.	.	.	.	.	G	R	G	T	S	T	Y	D	G	L	S	L	A	W	A	C	A	E	N	L	A	.	.	.	.	N	K	I	K	A	L	T	L	F	A	T	H	Y	F	E
Query Conservation														.	.	.	.	.	.																						.	.	.	.
Alig confidence			.											.	.	.	.	.	.																						.	.	.	.
Template Conservation			.
Template Sequence		N	.	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	V	G	N	D	S	Q	G	V	L	V	L	G	A	T	N	I	P	W
Template Known Secondary structure		T	.	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	T	T	T	T	S		S								S			T
Template Predicted Secondary structure			.
Template SS confidence
		224		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions