Job Description P23909 Confidence 82.62% Date Thu Jan 5 11:40:34 GMT 2012 Rank 378 Aligned Residues 85 % Identity 15% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	I	T	G	P	N	M	G	G	K	S	T	Y	M	R	Q	T	A	L	I	A	L	M	A	Y	I	G	S	Y	V	P	A	Q	K	V	E	I	G	P	I	D	R	I	F	T	R	V	G	A	A	D	D	L	A	S	G	R	S	T	F	M	V	E	M	T	E	T	A	N	I	L	H	N	A	T	E	Y	S	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	Q	K	A	E	G	G	V	L
Template Known Secondary structure								T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S						S	S	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.															.	200	.	.	.	.	.	.	.	.
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	M	D	E	I	G	R	G	T	S	T	Y	D	G	L	S	L	A	W	A	C	A	E	N	L	A	N	K	I	K	A	L	T	L	F	A	T	H
Query Conservation
Alig confidence				.				.	.																			.
Template Conservation				.				.	.																			.
Template Sequence		Y	V	.	G	D	I	.	.	A	Q	Y	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	.	E	R	C	R	V	R	V	I	A	S	C	S
Template Known Secondary structure				.				.	.	T	T																	.	T	T	T	T
Template Predicted Secondary structure				.				.	.																			.
Template SS confidence
		209	210		.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions