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Job DescriptionP23909
Confidence96.70%DateThu Jan 5 11:40:34 GMT 2012
Rank84Aligned Residues129
% Identity27%Templatec2vf7B_
PDB info PDB header:dna-binding proteinChain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   607..610.........620.........630.........640.........650.........660
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Query Sequence  RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAA. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GVMTSVTGVSGSGKSTLVSQALVDALAAHFGQGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAAT
Template Known Secondary structure  SSSTTSSTTS



SSGGG


SS
S
SSTT

TTTTSS
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   523......530.........540.........550.........560.........570.........580.........590.........600..
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  PLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE
Template Known Secondary structure  TS


TTSS
SSSSSSB
SSSTT






TTTSSS
B
TTGGG

SSS

T
BTTT
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   620.........630.........640.........650.........660.........670.........680.........690.........
 
   661........670 .........680.........690.........700.........710.........
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Query Sequence  . . . . . . . . . . . . . . . . . DDLASGRSTF. . . . MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI
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Template Sequence  SAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERL. QRQLVKLVDA.
Template Known Secondary structure  T
TTSBTT

GGG

SSSSS

S
SS

.T.
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   705....710.........720.........730.........740.........750.........760.........770.. .......780..
 
   720.........730.......
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Query Sequence  KALTLFATHYFELTQLPE
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Template Sequence  GNTVIAVEHKMQVVAASD
Template Known Secondary structure  T



TT
S
Template Predicted Secondary structure 





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   783......790.........800
 
Download:Text version

No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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