Job Description P23909 Confidence 88.75% Date Thu Jan 5 11:40:34 GMT 2012 Rank 292 Aligned Residues 84 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.								.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.						.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
Predicted Secondary structure																					.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		S	P	Q	R	R	M	L	I	I	T	G	P	N	M	G	G	K	S	T	.	.	.	.	.	.	.	Y	M	R	Q	T	A	L	I	A	L	M	A	Y	I	G	S	Y	V	P	A	Q	K	V	E	I	G	P	I	D	R	.	.	.	.	.	I	F	T	R	V	G	A	A	D	D	L	A	S	G	R	S	T	F	M
Query Conservation																					.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																															.	.	.	.	.															.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	.	.	.	.	.
Template Known Secondary structure		S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	M	T	E	T	A	N	I	L	H	N	A	T	E	Y	S	L	V	L	M	D	E	I	G	R
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R
Template Known Secondary structure		.	.	.	.	.							T	T	S	S		S									S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions