 |
Job Description | P23909 | Confidence | 95.46% | Date | Thu Jan 5 11:40:34 GMT 2012 |
Rank | 139 | Aligned Residues | 110 |
% Identity | 17% | Template | c2px0D_ |
PDB info |
PDB header:biosynthetic protein | Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; |
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
|
Resolution | 3.00 Å |
|
 |
  |   |
604 | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | |
|
. | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | P | Q | R | R | M | L | I | I | T | G | P | N | M | G | G | K | S | T | Y | M | R | Q | T | A | L | I | A | L | M | A | Y | I | G | S | . |
. |
Y | V | P | A | Q | K | V | E | I | G | P | I | D | R | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | T | R | V | G | A | A | D | D | L | A | S | G | R | S | T | F | M |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|   | . | . |   |
|
|
|   |   |
|   |
|   |
|   |
|   |
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
P | I | H | S | K | Y | I | V | L | F | G | S | T | G | A | G | K | T | T | T | L | A | K | L | A | A | I | S | M | L | E | K | H | K | K | I | A | F | I | T | T | D | T | Y | R | I | A | A | V | E | Q | L | K | T | Y | A | E | L | L | Q | A | P | L | E | V | C | Y | T | K | E | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
| S |
| S | S | B |
|
|  |  |  |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |
|
| S | S | T | T | T | T |  |  |  |  | T |  |  |  |  | T | T |
|
|  |  |  |
| S | S |  |  |  | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
172 | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | |
|
|
|
|
|
|
|
|
  |
  |   |
672 | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | M | T | E | T | A | N | I | L | H | N | A | T | E | Y | S | L | V | L | M | D | E | I | G | R | G | T | S | T | Y | D | G | L | S | L | A | W | A | C | A | E | N | L | A | N | K | I | K | A | L | T | L | F | A | T |
Query Conservation |   |
  |
|
|   |
|   |   |   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
F | Q | Q | A | K | E | L | F | S | E | Y | D | H | V | F | V | D | T | A | G | R | N | F | K | D | P | Q | Y | I | D | E | L | K | E | T | I | P | F | E | S | S | I | Q | S | F | L | V | L | S | A | T |
Template Known Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  | T | T | T | T | S | S |  |  |  |  |  |  |
|
|
|
|
| S | S | G | G | G | T |  |  |  |  |  |  | S |
|
|
| T | T | B |
|
|  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
243 | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|