 |
Job Description | P23909 | Confidence | 89.23% | Date | Thu Jan 5 11:40:34 GMT 2012 |
Rank | 284 | Aligned Residues | 84 |
% Identity | 17% | Template | c2orvB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:thymidine kinase; |
PDBTitle: human thymidine kinase 1 in complex with tp4a
|
Resolution | 2.30 Å |
|
 |
  |   |
607 | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | |
|
. | . | 640 | . | . | |
|
|
. | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | R | M | L | I | I | T | G | P | N | M | G | G | K | S | T | Y | M | R | Q | T | A | L | I | A | L | M | A | Y | I | G | . |
. |
S | Y | V | P | A | . |
. |
. |
Q | K | V | E | I | G | P | I | D | R | I | F | T | R | V | G | A | A | D | D | L | A | S | G | R | S | T | F | M | V | E | M | T | E | T | A | N | I | L |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|
|
|
| . | . |   |   |
|
|
| . | . | . |   |   |
|   |
|   |
|   |
|   |
|
|
|
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |   |
|
|   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |
|
|
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
G | Q | I | Q | V | I | L | G | P | M | F | S | G | K | S | T | E | L | M | R | R | V | R | R | F | Q | I | A | Q | Y | K | C | L | V | I | K | Y | A | K | D | M | E | A | L | P | A | C | L | L | R | D | V | A | Q | E | A | L | G | V | A | V | I | G | I | D | E | G | Q | F | F | P | D | I | V | E | F | C | E | A | M |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | S | S | G | G | G | G |  |  |  |  | T | T |
| S |  |  |  |  | S | S | G | G | G |
| T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
  |   |
682 | . | . | . | . | . | . | . | 690 |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | N | A | T | E | Y | S | L | V |
Query Conservation |   |
  |   |
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |
Template Sequence |   |
A | N | A | G | K | T | V | I | V |
Template Known Secondary structure |   |
 |  | T | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|