 |
Job Description | P23909 | Confidence | 95.87% | Date | Thu Jan 5 11:40:34 GMT 2012 |
Rank | 120 | Aligned Residues | 110 |
% Identity | 23% | Template | c2og2A_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:putative signal recognition particle receptor; |
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
|
Resolution | 2.00 Å |
|
 |
  |   |
604 | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | |
|
|
. | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | |
|
|
. | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | P | Q | R | R | M | L | I | I | T | G | P | N | M | G | G | K | S | T | Y | M | R | Q | T | A | L | I | A | L | M | A | Y | I | G | S | . |
. |
. |
Y | V | P | A | Q | K | V | E | I | G | P | I | D | R | I | . |
. |
. |
F | T | R | V | G | A | A | D | D | L | A | S | G | R | S | T | F | M | V | E | M | T | E | T |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|   | . | . | . |   |
|
|
|   |   |
|   |
|   |
|   |
|   |
| . | . | . |
|
|
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |   |
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |   |
|
|
|   |
|   |
|
|
|
|
|   |
|
|
|
|   |   | . | . |   |   |   |   |
|   |   |
|   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
F | R | K | P | A | V | I | M | I | V | G | V | N | G | G | G | K | T | T | S | L | G | K | L | A | H | R | . |
. |
L | K | N | E | G | T | K | V | L | M | A | A | G | D | T | F | R | A | A | A | S | D | Q | L | E | I | W | A | E | R | T | G | C | E | I | V | V | A | E | G | D | K | A | K | A | A | T | V | L | S | K |
Template Known Secondary structure |   |
S | S | S | S |  |  |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  | T | T |
|
|  |  |  |  |
|
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |
|
| S | S | S | S |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | |
|
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 |
  |
  |   |
678 | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | N | I | L | H | N | A | T | E | Y | S | L | V | L | M | D | E | I | G | R | G | T | S | T | Y | D | G | L | S | L | A | W | A | C | A | E | N | L |
Query Conservation |   |
  |   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |
Template Sequence |   |
A | V | K | R | G | K | E | E | G | Y | D | V | V | L | C | D | T | S | G | R | L | H | T | N | Y | S | L | M | E | E | L | I | A | C | K | K | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
|
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
201 | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|