Job Description P23909 Confidence 93.09% Date Thu Jan 5 11:40:34 GMT 2012 Rank 198 Aligned Residues 109 % Identity 17% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Q	R	R	M	L	I	I	T	G	P	N	M	G	G	K	S	T	Y	M	R	Q	T	A	L	I	A	L	M	A	Y	I	G	S	Y	V	P	A	Q	K	V	E	I	G	P	I	D	R	I	F	T	R	V	G	A	A	D	D	L	A	S	G	R	S	T	F	M	V	E	M	T	E	T	A	N	I	L	H	N
Query Conservation
Alig confidence																											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	.	.	.	.	.	T	E	A	N	N	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	S	I	S	S	S	D	L	V	S	K	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	L	A	R	E
Template Known Secondary structure						S						S	S	S	S	S											.	.	.	.	.			T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.								S	S			S	S			S
Template Predicted Secondary structure																											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.														.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		684	.	.	.	.	.	690	.	.	.	.	.						.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720						.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure														.	.	.	.	.																										.	.	.	.	.
Query SS confidence														.	.	.	.	.																										.	.	.	.	.
Query Sequence		A	T	E	Y	S	L	V	L	M	D	E	I	.	.	.	.	.	G	R	G	T	S	T	Y	D	G	L	S	L	A	W	A	C	A	E	N	L	A	N	K	I	K	.	.	.	.	.	A	L	T	L	F	A	T	H	Y	F	E
Query Conservation														.	.	.	.	.																										.	.	.	.	.
Alig confidence					.									.	.	.	.	.																										.	.	.	.	.
Template Conservation					.
Template Sequence		N	K	P	.	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I	P	W
Template Known Secondary structure		T	S	S	.							T	T	T	G	G	G			S	S	S			T	T																S	S	S			T	T								S		T	T
Template Predicted Secondary structure					.
Template SS confidence
		226	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions