Return to main results Retrieve Phyre Job Id

Job DescriptionP23909
Confidence97.66%DateThu Jan 5 11:40:34 GMT 2012
Rank67Aligned Residues137
% Identity17%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   593......600.... .....610.........620..... ...
Predicted Secondary structure 



.








...........................................
Query SS confidence 











.




















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


Query Sequence  NEPFIANPLNLS. PQRRMLIITGPNMGGKSTYMR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTA
Query Conservation      




 
 .      











 

........................................... 

Alig confidence 











.




















...........................................


Template Conservation       
  


 
  


  
 
 








  
 

  
  
 
   
  
       
               

 
Template Sequence  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA
Template Known Secondary structure  TT

TT

SGGGSTTTSS


SSTT
TT

SSTT



B
S




TTS
Template Predicted Secondary structure 











































Template SS confidence 















































































   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   629630.........640.........650.........660.........670.........680.. .......690.........700.......
Predicted Secondary structure 





















.











Query SS confidence 





















































.
























Query Sequence  LIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH. NATEYSLVLMDEIGRGTSTYDGLSL
Query Conservation 
  





  


  
 
 
 
 





  
 
  
 


  

 
   

 . 

  












  

 

Alig confidence 

















.


































.
























Template Conservation   
                .                      




 


 




   
 








 

      
Template Sequence  ENMSFGLKLAGAKKEVIN. QRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM
Template Known Secondary structure  TTTTTTSSSSTTTTTT.TTTGGGT
TT
SS



GGGTTTSSSSTTTT

S
BSSTTTT

TTT
Template Predicted Secondary structure 










.

























Template SS confidence 















































































   94.....100.........110. ........120.........130.........140.........150.........160.........170..
 
   708.710.........720.........730.
Predicted Secondary structure 





Query SS confidence 























Query Sequence  AWACAENLANKIKALTLFATHYFE
Query Conservation 
 



 
        




  
Alig confidence 










.











Template Conservation     
  
    .
 


 


   
Template Sequence  RIEISRLHKRL. GRTMIYVTHDQV
Template Known Secondary structure  T.T

S
Template Predicted Secondary structure 
.



Template SS confidence 























   173......180... ......190.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions