Job Description P23909 Confidence 100.00% Date Thu Jan 5 11:40:34 GMT 2012 Rank 5 Aligned Residues 746 % Identity 42% Template c1ewqA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution Resolution 2.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	F	D	A	H	T	P	M	M	Q	Q	Y	L	R	L	K	A	Q	H	P	E	I	L	L	F	Y	R	M	G	D	F	Y	E	L	F	Y	D	D	A	K	R	A	S	Q	L	L	D	I	S	L	T	K	R	G	A	S	A	G	E	P	I	P	M	A	G	I	P	Y	H	A	V	E	N	Y	L	A	K	L	V
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		E	G	P	G	P	L	P	P	L	L	Q	Q	Y	V	E	L	R	D	Q	Y	P	D	Y	L	L	L	F	Q	V	G	D	F	Y	E	C	F	G	E	D	A	E	R	L	A	R	A	L	G	L	V	L	T	H	K	T	S	K	.	D	F	T	T	P	X	A	G	I	P	L	R	A	F	E	A	Y	A	E	R	L	L
Template Known Secondary structure		S			S																	T	T	S							T	T																	T									S	.	S										G	G	G
Template Predicted Secondary structure																																																											.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	G	E	S	V	A	I	C	E	Q	I	G	D	P	A	T	S	K	G	P	V	E	R	K	V	V	R	I	V	T	P	G	T	I	S	D	E	A	L	L	Q	E	R	Q	D	N	L	L	A	A	I	W	Q	D	S	K	G	F	G	Y	A	T	L	D	I	S	S	G	R	F	R	L	S	E	P	A	D	R	E
Query Conservation
Alig confidence																																											.													.
Template Conservation																																											.													.
Template Sequence		K	X	G	F	R	L	A	V	A	D	Q	V	E	P	A	E	E	A	E	G	L	V	R	R	E	V	T	Q	L	L	T	P	G	T	L	L	Q	E	S	L	L	.	P	R	E	A	N	Y	L	A	A	I	A	T	.	G	D	G	W	G	L	A	F	L	D	V	S	T	G	E	F	K	G	T	V	L	K	S	K	S
Template Known Secondary structure			T	T										S		G	G	G		S	S	S											G	G	G				G	G	G	S	.		S	S										.	S	S	S								T	T	T	T								S	S
Template Predicted Secondary structure																																											.													.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		T	M	A	A	E	L	Q	R	T	N	P	A	E	L	L	Y	A	E	D	F	A	E	M	S	L	I	E	G	R	R	G	L	R	R	R	P	L	W	E	F	E	I	D	T	A	R	Q	Q	L	N	L	Q	F	G	T	R	D	L	V	G	F	G	.	.	.	V	E	N	A	P	R	G	L	C	A	A	G	C	L	L
Query Conservation																																																																.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	Y	D	E	L	F	R	H	R	P	A	E	V	L	L	A	P	E	L	L	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	F	L	D	E	F	R	K	R	F	P	V	X	L	S	E	A	P	F	E	P	E	G	E	G	P	L	A	L	R	R	A	R	G	A	L	L
Template Known Secondary structure													S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S											S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	A	K	D	T	Q	R	T	T	L	P	H	I	R	S	I	T	M	E	R	E	Q	D	S	I	I	M	D	A	A	T	R	R	N	L	E	I	T	Q	N	L	A	G	G	A	E	N	T	L	A	S	V	L	D	C	T	V	T	P	M	G	S	R	M	L	K	R	W	L	H	M	P	V	R	D	T	R	V	L
Query Conservation
Alig confidence													.																																	.	.
Template Conservation													.																																	.	.
Template Sequence		A	Y	A	Q	R	T	Q	G	G	A	L	.	S	L	Q	P	F	R	F	Y	D	P	G	A	F	X	R	L	P	E	A	T	L	R	A	L	E	V	F	E	P	L	R	G	.	.	Q	D	T	L	F	S	V	L	D	E	T	R	T	A	P	G	R	R	L	L	Q	S	W	L	R	H	P	L	L	D	R	G	P	L
Template Known Secondary structure									T	S			.										G	G	G	S		B									T	T	S	S	S		S	S	S	.	.												S	S													S
Template Predicted Secondary structure													.																																	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		L	E	R	Q	Q	T	I	G	A	L	Q	D	F	.	.	.	T	A	G	L	Q	P	V	L	R	Q	V	G	D	L	E	R	I	L	A	R	L	A	L	R	T	A	R	P	R	D	L	A	R	M	R	H	A	F	Q	Q	L	P	E	L	R	A	Q	L	E	T	V	D	S	A	P	V	Q	A	L	R	E	K	M	G
Query Conservation															.	.	.
Alig confidence															.	.	.																																																						.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.
Template Sequence		E	A	R	L	D	R	V	E	G	F	V	R	E	G	A	L	R	E	G	V	R	R	L	L	Y	R	L	A	D	L	E	R	L	A	T	R	L	E	L	G	R	A	S	P	K	D	L	G	A	L	R	R	S	L	Q	I	L	P	E	L	R	A	L	L	G	E	E	V	G	.	.	.	.	.	.	.	.	.	L	P
Template Known Secondary structure																										T	T													T	T																										T	T	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.										.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	A	E	L	R	D	L	L	E	R	A	I	I	D	T	P	P	V	L	V	R	D	G	G	V	I	A	S	G	Y	N	E	E	L	D	E	W	R	A	L	A	D	G	A	T	D	Y	L	E	R	L	E	V	R	E	R	E	R	T	G	L	D	T	L	K	V	G	F	N	A	V	H	G	Y	Y	I	Q	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	S	P	L	K	E	E	L	E	A	A	L	V	E	D	P	P	L	K	V	S	E	G	G	L	I	R	E	G	Y	D	P	D	L	D	A	L	R	A	A	H	R	E	G	V	A	Y	F	L	E	L	E	E	R	E	R	E	R	T	G	I	P	T	L	K	V	G	Y	N	A	V	F	G	Y	Y	L	E	V	T
Template Known Secondary structure														B		S	S			S		T	T	S	S			B		T	T	S																																T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Q	S	H	L	A	P	I	N	Y	M	R	R	Q	T	L	K	N	A	E	R	Y	I	I	P	E	L	K	E	Y	E	D	K	V	L	T	S	K	G	K	A	L	A	L	E	K	Q	L	Y	E	E	L	F	D	L	L	L	P	H	L	E	A	L	Q	Q	S	A	S	A	L	A	E	L	D	V	L	V	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	Y	Y	E	R	V	P	K	E	Y	R	P	V	Q	T	L	K	D	R	Q	R	Y	T	L	P	E	X	K	E	K	E	R	E	V	Y	R	L	E	A	L	I	R	R	R	E	E	E	V	F	L	E	V	R	E	R	A	K	R	Q	A	E	A	L	R	E	A	A	R	I	L	A	E	L	D	V	Y	A	A	L
Template Known Secondary structure		G	G	G	G	G	G	S		T	T								S	S																																								T	T
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	A	Y	T	L	N	Y	T	C	P	T	F	I	D	K	P	G	I	R	I	T	E	G	R	H	P	V	V	E	Q	V	L	N	E	P	F	I	A	N	P	L	N	L	S	P	Q	R	R	M	L	I	I	T	G	P	N	M	G	G	K	S	T	Y	M	R	Q	T	A	L	I	A	L	M	A	Y	I	G	S
Query Conservation
Alig confidence																			.	.														.	.												.	.
Template Conservation																			.	.														.	.												.	.
Template Sequence		A	E	V	A	V	R	Y	G	Y	V	R	P	R	F	G	D	R	.	.	L	Q	I	R	A	G	R	H	P	V	V	E	R	.	.	R	T	E	F	V	P	N	D	L	E	X	.	.	A	H	E	L	V	L	I	T	G	P	N	X	A	G	K	S	T	F	L	R	Q	T	A	L	I	A	L	L	A	Q	V	G	S
Template Known Secondary structure									T		B					S	S	S	.	.									T	T	G	G	G	.	.	T	S										.	.	S	S							S		S	S	S	S																T	T	T
Template Predicted Secondary structure																			.	.														.	.												.	.
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550			.	.	.	.	.	.	.	.	.	560	.	.	.			.	.	.	.	.	.	570	.	.	.	.			.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	P	A	Q	K	V	E	I	G	P	I	D	R	I	F	T	R	V	G	A	A	D	D	L	A	S	G	R	S	T	F	M	V	E	M	T	E	T	A	N	I	L	H	N	A	T	E	Y	S	L	V	L	M	D	E	I	G	R	G	T	S	T	Y	D	G	L	S	L	A	W	A	C	A	E	N	L	A	N	K
Query Conservation
Alig confidence																							.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		F	V	P	A	E	E	A	H	L	P	L	F	D	G	I	Y	T	R	I	G	A	.	.	.	.	.	.	G	K	S	T	F	X	V	E	X	E	E	V	A	L	I	L	K	E	A	T	E	N	S	L	V	L	L	D	E	V	G	R	G	T	S	S	L	D	G	V	A	I	A	T	A	V	A	E	A	L	H	E	R
Template Known Secondary structure			B	S	S	S								S									.	.	.	.	.	.			S																		T	T							S	T	T	T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.							.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	L	T	L	F	A	T	H	Y	F	E	L	T	Q	L	P	E	K	M	E	G	V	A	N	V	H	L	D	A	L	E	H	G	D	T	I	A	F	M	H	S	V	Q	D	G	A	A	S	K	S	Y	G	L	A	V	A	A	L	A	G	V	P	K	E	V	I	K	R	A	R	Q	K	L	R	E	L	E	S
Query Conservation
Alig confidence		.																		.	.
Template Conservation		.																		.	.
Template Sequence		.	R	A	Y	T	L	F	A	T	H	Y	F	E	L	T	A	L	G	.	.	L	P	R	L	K	N	L	H	V	A	A	R	E	E	A	G	G	L	V	F	Y	H	Q	V	L	P	G	P	A	S	K	S	Y	G	V	E	V	A	A	X	A	G	L	P	K	E	V	V	A	R	A	R	A	L	L	Q	A	X	A	A
Template Known Secondary structure		.	T														T			.	.		T	T												S	S	S										S			S	S										T	T																	T	T
Template Predicted Secondary structure		.																		.	.
Template SS confidence
			688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.			.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.
		799
Predicted Secondary structure
Query SS confidence
Query Sequence		I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		765