Job Description P00888 Confidence 100.00% Date Thu Jan 5 10:56:59 GMT 2012 Rank 16 Aligned Residues 237 % Identity 21% Template c3pg8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	D	I	I	A	G	R	D	P	R	L	L	V	V	C	G	P	C	S	I	H	D	P	E	T	A	L	E	Y	A	R	R	F	K	A	L	A	A	E	V	S	D	S	L	Y	L	V	M	R	V	Y	F	E	K	P	R	T	T	V	G	W	K	G	L	I	N	D	P	H	M	D	G	S	F	D	V	E	A	G
Query Conservation
Alig confidence											.										.																						.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.										.																						.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	D	V	K	I	G	N	G	.	Y	F	T	I	I	A	G	P	S	.	V	E	G	R	E	M	L	M	E	T	A	H	F	L	S	E	L	G	V	K	V	.	.	.	.	.	.	.	L	R	G	G	A	Y	K	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	G
Template Known Secondary structure			S	S				S	T	T	.										.																	T	T				.	.	.	.	.	.	.								.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.										.																						.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.																					.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	I	A	R	K	L	L	L	E	L	V	N	M	G	L	P	L	A	T	E	A	L	D	P	N	S	P	Q	Y	L	G	D	L	F	S	W	S	A	I	G	A	R	T	T	E	S	Q	T	H	R	E	M	A	S	G	L	S	M	P	V	G	F	K	N	G	T	D	G	S	L	A	T	A	I	N	A	M	R	A
Query Conservation
Alig confidence									.	.	.																																																																				.	.	.
Template Conservation									.	.	.																																																																				.	.	.
Template Sequence		L	E	Y	L	R	E	A	.	.	.	A	D	K	Y	G	M	Y	V	V	T	E	A	L	G	E	D	D	L	P	K	V	A	E	Y	A	D	I	I	Q	I	G	A	R	N	A	Q	N	F	R	L	L	S	K	A	G	S	Y	N	K	P	V	L	L	K	R	G	F	M	N	T	I	E	E	F	L	L	S	.	.	.
Template Known Secondary structure									.	.	.				T	T									S	G	G	G									S						G	G	G	T	T									G	G	G		S								T	T										.	.	.
Template Predicted Secondary structure									.	.	.																																																																				.	.	.
Template SS confidence
		147	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		A	A	Q	P	H	R	F	V	G	I	N	Q	A	G	Q	V	A	L	L	Q	T	Q	G	N	P	D	G	H	V	I	L	R	G	G	K	A	.	P	N	Y	S	P	A	D	V	A	Q	C	E	K	E	M	E	Q	A	G	L	R	P	S	L	M	V	D	C	S	H	G	N	S	N	K	D	Y	R	R	Q	P	A	V
Query Conservation																																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	Y	I	A	N	S	G	N	T	K	I	I	L	C	E	R	G	I	R	T	F	E	K	A	T	R	N	T	L	D	I	S	A	V	P	I	I	R	K	E	S	H	L	P	I	L	V	D	P	S	H	S	.	G	G	R	R	D	L	V	I	P	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T											B			S		S	S	S	S	S	B			T	T									B	S	S						T	T	T	T	.	T			G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Template SS confidence
																	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	V	V	A	Q	I	K	D	G	N	R	S	I	I	G	L	M	I	E	S	N	I	H	E	G	N	Q	S	S	E	Q	P	R	S	E	M	K	Y	G	V	S	V	T	D	A	C	I	S	W	E	M	T	D	A	L	L	R	E	I	H	Q	D	L	N	G	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	A	I	A	V	.	.	.	.	.	.	.	G	A	H	G	I	I	V	E	V	H	P	E	P	E	K	A	L	S	D	G	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	S	L	D	F	E	L	F	K	E	L	V	Q	E	M	K	K	L	A	D	A	L
Template Known Secondary structure								.	.	.	.	.	.	.	T		S						B		S		T	T	T		S	S	S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.		B
Template Predicted Secondary structure								.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		285	.	.	.	.	290								.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.													.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions