Job Description P00888 Confidence 100.00% Date Thu Jan 5 10:56:59 GMT 2012 Rank 4 Aligned Residues 335 % Identity 52% Template c1ofaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: crystal structure of the tyrosine-regulated2 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase3 from saccharomyces cerevisiae in complex with4 phosphoenolpyruvate and cobalt(ii) Resolution 2.01 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	I	T	D	E	Q	V	L	M	T	P	E	Q	L	K	A	A	F	P	L	S	L	Q	Q	E	A	Q	I	A	D	S	R	K	S	I	S	D	I	I	A	G	R	D	P	R	L	L	V	V	C	G	P	C	S	I	H	D	P	E	T	A	L	E	Y	A	R	R	F	K	A	L	A	A	E	V	S	D	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	I	L	G	Y	D	P	L	A	S	P	A	L	L	Q	V	Q	I	P	A	T	P	T	S	L	E	T	A	K	R	G	R	R	E	A	I	D	I	I	T	G	K	D	D	R	V	L	V	I	V	G	P	C	S	I	H	D	L	E	A	A	Q	E	Y	A	L	R	L	K	K	L	S	D	E	L	K	G	D	L
Template Known Secondary structure																				S																						T	T	S			S								S																							T	T	T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	V	M	R	V	Y	F	E	K	P	R	T	T	V	G	W	K	G	L	I	N	D	P	H	M	D	G	S	F	D	V	E	A	G	L	Q	I	A	R	K	L	L	L	E	L	V	N	M	G	L	P	L	A	T	E	A	L	D	P	N	S	P	Q	Y	L	G	D	L	F	S	W	S	A	I	G	A	R	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	I	M	R	A	Y	L	E	K	P	R	T	T	V	G	W	K	G	L	I	N	D	P	D	V	N	N	T	F	N	I	N	K	G	L	Q	S	A	R	Q	L	F	V	N	L	T	N	I	G	L	P	I	G	S	E	M	L	D	T	I	S	P	Q	Y	L	A	D	L	V	S	F	G	A	I	G	A	R	T	T
Template Known Secondary structure														S	S	S	S				T	T	T		T	T	S	S	S																				T	T	T									S	S	S	T					G	G	G		S						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		E	S	Q	T	H	R	E	M	A	S	G	L	S	M	P	V	G	F	K	N	G	T	D	G	S	L	A	T	A	I	N	A	M	R	A	A	A	Q	P	H	R	F	V	G	I	N	Q	A	G	Q	V	A	L	L	Q	T	Q	G	N	P	D	G	H	V	I	L	R	G	G	K	.	A	P	N	Y	S	P	A	D	V
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		E	S	Q	L	H	R	E	L	A	S	G	L	S	F	P	V	G	F	K	N	G	T	D	G	T	L	N	V	A	V	D	A	C	Q	A	A	A	H	S	H	H	F	M	G	V	T	K	H	G	V	A	A	I	T	T	T	K	G	N	E	H	C	F	V	I	L	R	G	G	K	K	G	T	N	Y	D	A	K	S	V
Template Known Secondary structure		T										T		S	S								T	T	S		S											T	S									T	T	S											T	T									T	T					S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	C	E	K	E	M	E	Q	A	G	L	R	P	S	L	M	V	D	C	S	H	G	N	S	N	K	D	Y	R	R	Q	P	A	V	A	E	S	V	V	A	Q	I	K	D	G	N	R	S	I	I	G	L	M	I	E	S	N	I	H	E	G	N	Q	S	S	E	Q	P	R	S	E	M	K	Y	G	V	S	V	T
Query Conservation
Alig confidence												.	.																																																						.	.	.	.	.	.	.	.
Template Conservation												.	.																																																						.	.	.	.	.	.	.	.
Template Sequence		A	E	A	K	A	Q	L	P	A	G	.	.	S	N	G	L	M	I	D	Y	S	H	G	N	S	N	K	D	F	R	N	Q	P	K	V	N	D	V	V	C	E	Q	I	A	N	G	E	N	A	I	T	G	V	M	I	E	S	N	I	N	E	G	N	Q	G	.	.	.	.	.	.	.	.	K	Y	G	V	S	I	T
Template Known Secondary structure										T	T	.	.								S	S	G	G	G	G	T	T		G	G	G														T	T			S								B		S	S	S	B	B			.	.	.	.	.	.	.	.		T	T		B	S	S
Template Predicted Secondary structure												.	.																																																						.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.									.	.	.	.	330	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	C	I	S	W	E	M	T	D	A	L	L	R	E	I	H	Q	D	L	N	G	Q	L	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	C	I	G	W	E	T	T	E	D	V	L	R	K	L	A	A	A	V	R	Q	R	R	E	V
Template Known Secondary structure		S		B	B
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions