|   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | K | I | Y | H | N | P | R | C | S | K | S | R | E | T | L | N | L | L | K | E | N | G | V | E | P | E | V | V | L | Y | L | E | T | P | A | D | A | A | T | L | R | D | L | L | K | I | L | G | M | N | S | A | R | E | L | M | R | Q | K | E | D | L | Y | K | E | L | N | L | A | D | S | S | L | S | E | E | A | L |
Query Conservation |   |
  |
|   |
|
|   |   |   |   |
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |
|   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |   |
| . |
|
|
|   |
|
|
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|
|   |   |   |   |
|   |
|   |   |
|
|   |   |
|
|   |   |   |
|   | . |   |   |   |   |
|
|
|
|   |   |   |   |   |
|   |
|   |
|   |   |   |   |
|
|   |   |
|   |
Template Sequence |   |
N | I | T | I | Y | H | N | P | . |
A | G | T | S | R | N | T | L | E | M | I | R | N | S | G | T | E | P | T | I | I | L | Y | L | E | N | P | P | S | R | D | E | L | V | K | L | I | A | D | M | G | I | . |
S | V | R | A | L | L | R | K | N | V | E | P | Y | E | Q | L | G | L | A | E | D | K | F | T | D | D | Q | L |
Template Known Secondary structure |   |
|
|  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |
| T | T | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  | T | S | . |
|  |  |  |  | B |
|
| S | S |  |  |  |  |  | T | T | T | T | S | S |
|
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | |
. | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | Q | A | M | V | D | N | P | K | L | M | E | R | P | I | V | V | A | N | G | K | A | R | I | G | R | P | P | E | Q | V | L | E | I | V | G |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |   |
|   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |
|
|
|   |   |
|   |
|   |   |   |
|   |
Template Sequence |   |
I | D | F | M | L | Q | H | P | I | L | I | N | R | P | I | V | V | T | P | L | G | T | R | L | C | R | P | S | E | V | V | L | D | I | L | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  | S | G | G | G | B |
| S |
|  |  |  |  | T | T |  |  |  |  |
| S | S | G | G | G | G | G | G | T |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
  |