Job Description P0A6L2 Confidence 96.32% Date Thu Jan 5 11:03:25 GMT 2012 Rank 87 Aligned Residues 229 % Identity 13% Template d1bwva1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		V	A	I	V	T	P	M	D	E	K	G	N	V	C	R	A	S	L	K	K	L	I	D	Y	H	V	A	S	G	T	S	A	I	V	S	V	G	T	T	G	E	S	A	T	L	N	H	D	E	H	.	.	.	.	A	D	V	V	M	M	T	L	D	L	A	D	G	R	I	P	V	I	A	G	T	G	A	N	A	T
Query Conservation																																																				.	.	.	.
Alig confidence																																			.																	.	.	.	.
Template Conservation																																			.
Template Sequence		P	L	L	G	C	T	T	K	P	K	L	G	L	S	G	K	N	Y	G	R	V	V	Y	E	A	L	K	G	G	L	D	F	V	.	D	D	E	N	I	N	S	Q	P	F	M	R	W	R	E	R	Y	L	F	T	M	E	A	V	N	K	A	S	A	A	T	G	E	V	K	G	H	Y	L	N	V	T	A	A	T	M
Template Known Secondary structure									S	S	S	S																		T		S	B		.			T	T		S	S	B	T	T	B																					T	S			B								S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																				.	.	.	.	.	110	.	.	.	.	.	.	.											.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	A	I	S	L	T	Q	R	F	N	D	S	G	I	V	G	C	L	T	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	Y	N	R	P	S	Q	E	G	L	Y	Q	.	.	.	.	.	.	.	.	.	.	H	F	K	A	I	A	E	H	T	D	L	P	Q	I	L	Y
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	M	Y	A	R	A	N	F	A	K	E	L	G	S	V	I	I	M	I	D	L	V	I	G	Y	T	A	I	Q	T	M	A	K	W	A	R	D	N	D	M	I	L	H	L	H	R	A	G	N	S	T	Y	S	R	Q	K	N	H	G	M	N	F	R	V	I	C	K	W	M	R	M	A	G	V	D	H	I	H	A
Template Known Secondary structure														T	T		S						G	G	G															T	T								T	T	T					S		T	T	S	S														T		S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	P	S	R	T	G	C	D	L	L	P	E	T	V	G	R	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	N	I	I	G	I	K	E	A	T	G	N	L	T	R	V	N	Q	I	K	E	L	V	S	D	D	F	V	L	L	S	G	D	D	A	S
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		G	T	V	V	.	G	K	L	E	G	D	P	I	I	T	R	G	F	Y	K	T	L	L	L	P	K	L	E	R	N	L	Q	E	G	L	F	F	D	M	E	W	A	S	L	R	K	V	M	P	V	A	S	G	G	I	H	A	G	Q	M	H	Q	L	I	H	Y	L	G	E	D	V	V	L	Q	F	G	G	G	T	I
Template Known Secondary structure				S	S	.	S	S	S																	S					B	T	T	T	T	B		S					T	T										S	S			T	T	S										S	S						S
Template Predicted Secondary structure						.
Template SS confidence
		329	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.														.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	D	F	M	Q	L	G	G	H	G	V	I	S	V	T	A	N	V	A	A	R	D	M	A	Q	M	C	K	L	A	A	E	G	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	R	V	I	N	Q	R	L	M	P	L	H	N	K	L	F	V	E	P	N
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.											.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.											.	.	.	.
Template Sequence		.	.	.	.	.	.	.	G	H	P	D	G	I	Q	A	G	A	.	.	.	.	T	A	N	R	V	A	L	E	A	M	I	L	A	R	N	E	N	R	D	Y	L	T	E	G	P	E	I	L	R	E	A	A	K	T	C	G	A	L	R	T	A	L	D	L	W	K	D	I	T	F
Template Known Secondary structure		.	.	.	.	.	.	.	T		T	T							.	.	.	.																T	T																													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
									408	.	410	.	.	.	.	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions