Job Description P0A6L2 Confidence 45.59% Date Thu Jan 5 11:03:25 GMT 2012 Rank 492 Aligned Residues 124 % Identity 11% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.											.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	L	I	D	Y	H	V	A	S	G	T	S	A	I	V	S	V	G	T	T	G	E	S	A	T	L	N	H	D	E	H	A	D	V	V	M	M	T	L	D	L	A	D	G	R	I	P	V	I	A	G	.	.	.	.	.	.	.	.	.	.	T	G	A	N	A	T	A	E	A	I	S	L	T	Q	R	F	N	D
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	I	A	L	T	D	.	.	.	.	.	.	.	.	.	.	.	.	D	N	L	Q	L	L	Q	S	S	D	V	P	Y	C	F	L	S	X	G	F	D	D	D	R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N
Template Known Secondary structure											S			S						S						.	.	.	.	.	.	.	.	.	.	.	.									T	T							S				S	S	S																					T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.													.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		S	G	I	V	G	C	L	T	V	T	P	Y	Y	N	R	P	S	Q	E	G	L	Y	Q	H	F	K	A	I	A	E	H	T	D	L	P	Q	I	L	Y	N	V	P	S	R	T	G	C	D	L	L	P	E	T	V	G	R	L	A	.	K	V	K	N	I	I	G	I
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		E	G	H	R	Q	I	G	I	A	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I	K	P	G	D	Y	S	Y	T	S	G	E	Q	A	X	K	A	F	G	K	N	T	D	L	T	G	I
Template Known Secondary structure		T	T			S					S				S	S																	T	T					G	G	G						S	S													T	T				S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions