 |
Job Description | P0A6L2 | Confidence | 58.83% | Date | Thu Jan 5 11:03:25 GMT 2012 |
Rank | 432 | Aligned Residues | 93 |
% Identity | 16% | Template | c2h6rG_ |
PDB info |
PDB header:isomerase | Chain: G: PDB Molecule:triosephosphate isomerase; |
PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii
|
Resolution | 2.30 Å |
|
 |
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | E | K | G | N | V | C | R | A | S | L | K | K | L | I | D | Y | H | V | A | S | G | T | S | A | I | V | S | V | G | T | T | G | E | S | A | T | L | N | H | D | E | H | A | D | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | M | M | T | L | D | L | A | D | G | R | I | P | V | I | A | G | T | G | A |
Query Conservation |   |
  |   |   |
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |   |   |
|
|
|
|
|   |   |   |
|
|   |
|
|
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   |   | . | . | . | . | . | . | . |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|
Template Sequence |   |
H | S | E | K | R | M | L | L | A | D | I | E | A | V | I | N | K | C | K | N | L | G | L | E | T | I | V | C | T | N | N | I | . |
. |
. |
. |
. |
. |
. |
N | T | S | K | A | V | A | A | L | S | P | D | C | I | A | V | E | P | P | E | G | T | V | R | A | V | K | E | I | N | K | D | V | K | V | L | C | G | A | G | I |
Template Known Secondary structure |   |
B | T | T | B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  | S | S | S | . | . | . | . | . | . | . | T | T |  |  |  |  | T | T | T |
|
| S |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |
| S | S |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | T | A | E | A | I | S | L | T | Q | R | F | N | D | S | G | I | V | G | C | L | T | V | T | P | Y | Y | N | R | P | S | Q | E | G | L | Y | Q |
Query Conservation |   |
  |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   | . | . | . | . |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |
Template Sequence |   |
S | K | G | E | D | V | K | . |
. |
. |
. |
A | A | L | D | L | G | A | E | G | V | L | L | A | S | G | V | V | K | A | K | N | V | E | E | A | I | R |
Template Known Secondary structure |   |
| S |  |  |  |  |  | . | . | . | . |  |  |  | T | T | T |
|
|  |  |  |  | S | T | T | T | T | T | S | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . | |
|
|
|
. | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|