Job Description P0A6L2 Confidence 94.94% Date Thu Jan 5 11:03:25 GMT 2012 Rank 129 Aligned Residues 132 % Identity 12% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																						.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																						.	.	.	.
Query Sequence		R	A	S	L	K	K	L	I	D	Y	H	V	A	S	G	T	S	A	I	V	S	V	G	T	T	G	E	S	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	H	D	E	H	.	.	.	.	A	D	V	V	M	M	T	L	D	L	A	D	G	R	I	P	V	I	A	G	T	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																						.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T
Template Known Secondary structure															T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
						78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.													.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	G	A	N	A	T	A	E	A	I	S	L	T	Q	R	F	N	D	S	G	I	V	G	C	L	T	.	.	.	.	.	.	.	.	.	.	.	.	V	T	P	Y	Y	N	R	P	S	Q	E	G	L	Y	Q	H	F	K	A	I	A	E	H	T	D	L	P	Q	I	L	Y	N	V	P	S	R	T	G	C
Query Conservation		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.								.	.																							.	.	.	.	.	.
Template Conservation																																																		.	.																							.	.	.	.	.	.
Template Sequence		V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	.	.	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	.	.	.	.	.	.	G	R
Template Known Secondary structure		S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			.	.	T	T	T	T									T	T		S	S						.	.	.	.	.	.	S
Template Predicted Secondary structure																																																		.	.																							.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	L	P	E	T	V	G	R	L	A	K	V	K	N	I	I	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I
Template Known Secondary structure														T	T	S		S	B
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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