Job Description P76470 Confidence 1.48% Date Thu Jan 5 12:23:15 GMT 2012 Rank 47 Aligned Residues 410 % Identity 9% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.											.	.	.
Predicted Secondary structure																																											.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	K	N	R	V	R	L	I	P	F	M	L	A	L	Y	V	L	A	F	L	D	R	S	N	I	G	F	A	K	Q	T	Y	Q	I	D	T	G	L	S	N	.	E	A	Y	A	L	G	A	G	I	F	F	V	V	Y	A	F	L	G	V	P	A	N	L	L	M	.	.	.	.	.	.	.	.	.	.	R	K	L
Query Conservation																																											.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	K	K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H
Template Known Secondary structure																																							T	T	T	T	T	T																								G	G	G		T	T	S		S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.														.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	R	T	W	I	G	T	T	T	L	L	W	G	F	L	S	A	A	M	A	W	A	D	T	E	A	K	F	L	I	V	R	T	L	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	E	A	G	F	F	P	G	M	I	Y	L	T	S	Q	W	F	P	Q	R	N	R	A	S	I	M	G	L	F
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I
Template Known Secondary structure		S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	G	A	P	L	A	L	T	L	G	S	P	L	S	G	A	L	L	E	M	H	G	F	M	G	H	P	G	W	F	W	M	F	V	I	E	G	L	L	A	V	G	A	G	V	F	T	F	F	W	L	D	D	T	P	E	Q	A	R	F	L	S	K	Q	E	K	T	L	L	I	N	Q	L	A	S	E	E	Q	Q
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	.	.	.	.	.	.	.	.	.	.	F	E	T	F	H	K	P	Q	P	K
Template Known Secondary structure																		T	T		S	S																														T		T	T							.	.	.	.	.	.	.	.	.	.						S	S	T	T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.											.	.	.	230	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	T	S	R	L	S	D	A	L	R	N	G	R	V	W	Q	L	A	I	I	Y	L	T	I	Q	V	A	V	Y	G	L	I	F	F	L	P	T	Q	V	A	A	L	L	G	T	K	V	G	F	T	A	S	V	V	T	A	I	P	W	V	A	A	L	F	G	T	W	L	I	P	R	Y	S	D	K	T	G	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I
Template Known Secondary structure		S	T	T	T	T																									T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.														.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	V	A	A	L	T	L	L	A	A	G	I	G	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	G	L	L	S	P	V	M	A	I	V	A	L	C	V	A	A	I	G	F	I	A	V	Q	P	V	F	W	T	M	P	T	Q	L	L	S	G	T	A	L	A	A	G	I	G	F	V	N	L	F
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I
Template Known Secondary structure																															T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.						.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		G	A	V	G	G	F	I	A	P	I	L	R	V	K	A	E	.	.	.	.	.	T	L	F	A	S	D	A	A	G	L	L	T	L	A	A	V	A	V	I	G	S	L	I	I	F	T	L	R	V	N	R	T	V	A	Q	T	D	V	A	H	H
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L
Template Known Secondary structure																			S	S	S			S																					T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.