Job Description P76470 Confidence 1.67% Date Thu Jan 5 12:23:15 GMT 2012 Rank 38 Aligned Residues 394 % Identity 9% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	L	D	A	V	V	K	K	N	R	V	R	L	I	P	F	M	L	A	L	Y	V	L	A	F	L	D	R	S	N	I	G	F	A	K	Q	T	Y	Q	I	D	T	G	L	S	N	E	A	Y	A	L	G	A	G	I	F	F	V	V	Y	A	F	L	G	V	P	A	N	L	L	M	R	K	L	G	A	R	T
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	F	V	E	K	R	F	N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	.	.	.	.	.	.	.	.	.	.	.	V	V	W	T	D
Template Known Secondary structure									T																			T																	T	T																	T	T		.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.												.	180	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	G	T	T	T	L	L	W	G	F	L	S	A	A	M	A	W	A	D	T	E	A	K	F	L	I	V	R	T	L	L	R	A	A	E	A	G	F	F	P	G	M	I	Y	L	T	S	Q	W	F	P	Q	R	N	R	A	S	I	M	G	L	F	Y	M	G	A	P	L	A	L	T	L	G	S	P	L	S	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y
Template Known Secondary structure																									T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		163	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		L	L	.	E	M	H	G	F	M	G	H	P	G	W	F	W	M	F	V	I	E	G	L	L	A	V	G	A	G	V	F	T	F	F	W	L	D	D	T	P	E	Q	A	R	F	L	S	K	Q	E	K	T	L	L	I	N	Q	L	A	S	E	E	Q	Q	K	V	T	S	R	L	S	D	A	L	R	N	G	R	V	W
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G
Template Known Secondary structure								S	S	S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	I	I	Y	L	T	I	Q	V	A	V	Y	G	L	I	F	F	L	P	T	Q	V	A	A	L	L	G	T	K	V	G	F	T	A	S	V	V	T	A	I	P	W	V	A	A	L	F	G	T	W	L	I	P	R	Y	S	D	K	T	G	E	R	R	N	V	A	A	L	T	L	L	A	A	G	I	G	I	G
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L
Template Known Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T							S		S		S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.																		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	L	L	S	P	V	M	A	I	V	A	L	C	V	A	A	I	G	F	I	A	V	Q	P	V	F	W	T	M	P	T	Q	L	L	S	G	T	A	L	A	A	G	I	G	F	V	N	L	F	G	A	V	G	G	F	I	A	P	I	L	R	V	K	A	E	T	L	F	A	S	D	A	A	G	L	L	T	L
Query Conservation
Alig confidence																																														.	.	.	.	.
Template Conservation																																														.	.	.	.	.
Template Sequence		I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	.	.	.	.	.	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L
Template Known Secondary structure			G	G	G	G	G	G		S											T	T	T															T	T							.	.	.	.	.																T	S	S	S
Template Predicted Secondary structure																																														.	.	.	.	.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.						.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	A	V	I	G	S	L	I	I	F	T	L	R	V	N	R	T	V	A	Q	T	D	V	A	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	T	M	V	V	I	A	F	T	S	L	S	T	S	I	N	D	D	D	P	K	G	I	S	V	T	S
Template Known Secondary structure														T	T		S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.

No model constructed - rank, confidence too low