Job Description P36547 Confidence 99.94% Date Thu Jan 5 11:53:11 GMT 2012 Rank 1 Aligned Residues 225 % Identity 16% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																						.	.	.	.																						.	.	.	.
Query SS confidence																						.	.	.	.																						.	.	.	.
Query Sequence		P	N	S	F	W	F	G	I	P	A	T	R	G	E	Q	G	F	I	G	S	.	.	.	.	Q	C	L	G	S	A	E	I	A	T	R	P	G	G	T	E	F	E	L	S	T	.	.	.	.	P	D	D	Y	T	I	L	G	V	V	L	S	E	D	V	I	T	R	Q	A	N	F	L	H	N	P	D	R	V	L	H
Query Conservation																						.	.	.	.																						.	.	.	.
Alig confidence																						.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		I	N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	K	S	Y	I	L	G	N	K	D	L	L	L
Template Known Secondary structure			S	S							S	S	S							T	T	T	T							T	T							T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	R	N	Q	S	A	L	E	V	K	E	Q	H	K	A	A	L	W	G	F	V	Q	Q	A	L	A	T	F	C	E	N	P	E	N	L	H	Q	P	A	V	R	K	V	L	G	D	N	L	L	M	A	M	G	A	M	L	E	E	A	Q	P	M	V	T	A	E	S	I	S	H	Q	S	Y	R	R	L	L	S	R
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		W	N	C	E	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	E	.	.	.	.	.	.	.	.	.	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K
Template Known Secondary structure						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	S	S																				T	.	.	.	.	.	.	.	.	.	T	T	S	S	S		S	S			T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.															.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	Y	V	L	E	N	M	S	E	P	V	T	V	L	D	L	C	N	Q	L	H	V	S	R	R	T	L	Q	N	A	F	H	A	I	L	G	I	G	P	N	A	W	L	K	R	I	R	L	N	A	V	R	R	E	L	I	S	P	W	S	Q	S	M	T	V	K	D	A	A	M	Q	W	G	F	W	H	L	G
Query Conservation
Alig confidence																																					.																									.	.	.
Template Conservation																																					.																									.	.	.
Template Sequence		I	S	C	L	V	K	S	D	I	T	R	N	W	R	W	A	D	I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	.	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	.	.	.	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S
Template Known Secondary structure									T	T	T	S												T												T	.	T	T																						T	.	.	.											T	T		S
Template Predicted Secondary structure																																					.																									.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	A	T	D	Y	Q	Q	L	F	S	E	K	P	S	L	T	L	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	S	T	V	F	K	S	T	M	N	V	A	P	S	E	Y	L	F	M
Template Known Secondary structure												S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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