Job Description P36771 Confidence 99.29% Date Thu Jan 5 11:53:52 GMT 2012 Rank 36 Aligned Residues 195 % Identity 17% Template c3mz1D_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021 Resolution 1.88 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	L	T	I	G	A	S	D	E	S	A	D	T	I	L	P	F	L	L	N	R	V	S	S	V	Y	P	K	L	A	L	D	V	R	V	K	R	N	A	Y	M	A	E	M	L	E	S	Q	E	V	D	L	M	V	T	T	H	R	P	S	A	F	K	A	L	N	L	R	T	S	P	T	H	W	Y	C	A	A
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		K	G	R	L	R	V	E	T	A	S	A	F	A	N	L	V	I	I	P	A	L	P	E	F	H	K	K	Y	P	D	I	Q	I	D	L	G	V	S	D	R	T	I	D	Y	L	A	.	E	N	V	D	C	A	I	R	A	G	T	L	T	D	Q	S	L	I	A	R	R	I	T	E	X	K	F	V	A	C	A	S	R
Template Known Secondary structure																	T													T	T												T	T				.	T	T								S					T	T	S
Template Predicted Secondary structure																																																.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.													.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Y	I	L	Q	K	G	E	P	I	P	L	V	L	L	D	D	.	.	.	.	.	.	.	.	.	.	.	.	P	S	P	F	R	D	M	V	L	A	T	L	N	K	A	D	I	P	W	R	L	A	Y	V	A	S	T	L	P	A	V	R	A	A	V	K	A	G	L	G	V	T	A	R	P	V	E	M	M	S	P
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	L	E	R	H	P	V	P	Q	H	P	S	D	L	E	K	N	C	Y	V	V	G	Y	F	L	P	K	T	G	Q	Q	X	P	F	H	F	R	R	G	N	E	E	I	E	V	S	G	R	Y	T	X	A	A	N	E	S	T	T	Y	L	A	A	A	R	A	G	L	G	V	I	Q	A	P	L	F	X	V	R	E
Template Known Secondary structure							S				S	S	G	G	G	G	G	T	T	S								T	T	T	T										T	T														S	S										T	T			B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		D	L	R	V	L	S	G	V	D	G	L	P	P	.	.	.	L	P	D	T	E	Y	L	L	C	Y	D	P	S	S	N	N	E	L	A	Q	V	I	Y	Q	A	M	E	S	Y	H	N	P	W	Q	Y
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		D	L	R	N	G	T	X	V	P	V	L	P	D	W	Q	V	E	P	X	P	I	Y	L	V	Y	P	P	N	R	H	L	S	S	R	L	R	V	F	A	D	W	V	V	K	V	X	A	Q	S	Q	N
Template Known Secondary structure						T	S						T	T		B												G	G	G	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions