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Job Description | P36771 | Confidence | 80.18% | Date | Thu Jan 5 11:53:52 GMT 2012 |
Rank | 217 | Aligned Residues | 100 |
% Identity | 15% | Template | c2xroE_ |
PDB info |
PDB header:dna-binding protein/dna | Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; |
PDBTitle: crystal structure of ttgv in complex with its dna operator
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Resolution | 3.40 Å |
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Predicted Secondary structure |   |
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Query Sequence |   |
D | L | L | R | T | F | V | A | V | A | D | L | N | . |
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Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
R | A | A | S | I | M | R | A | L | G | S | H | P | H | G | L | S | L | A | A | I | A | Q | L | V | G | L | P | R | S | T | V | Q | R | I | I | N | A | L | . |
E | E | E | F | L | V | E | A | L | G | P | A | G | G | F | R | L | G | P | A | L | G | Q | L | I | N | Q | A | Q | T | . |
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D | I | L | S | L | V | K | P |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | |
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. | . | 90 | . | . | . | . | . |
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91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
S | L | M | F | S | N | L | Q | G | V | L | T | I | G | A | S | D | E | S | A | D | T | I | L | P | F |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
Y | L | R | S | L | A | E | E | L | D | E | S | V | S | L | A | S | L | A | G | D | K | I | Y | V | L |
Template Known Secondary structure |   |
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| S |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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