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Job DescriptionP36771
Confidence100.00%DateThu Jan 5 11:53:52 GMT 2012
Rank2Aligned Residues280
% Identity19%Templatec1iz1B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  LDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACS
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Template Sequence  MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGD
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   91... .....100.........110.........120.........130.........140.........150.... .....160......
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Query Sequence  SLMF. . SNLQGVLTIGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVT. . THRPSAFKALNL
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Template Sequence  RSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNI
Template Known Secondary structure  TSS
SGGGGTSTT

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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   167..170.........180..... ....190.........200.........210.........220.........230......
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Query Sequence  RTSPTHWYCAAEYILQKGE. . . . . . . . . . PIPLVLLDDPSPFRDMVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVT
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Template Sequence  AQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASS
Template Known Secondary structure  GGGGGGTTT
GGGGTTS

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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   237..240.........250.........260.........270.........280.........290
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Query Sequence  ARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNP
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Template Sequence  IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSAKD
Template Known Secondary structure  S

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   241........250.........260.........270.........280.........290....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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