Return to main results Retrieve Phyre Job Id

Job DescriptionP17446
Confidence99.80%DateThu Jan 5 11:36:13 GMT 2012
Rank64Aligned Residues184
% Identity15%Templatec3kkdA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator; PDBTitle: structure of a putative tetr transcriptional regulator (pa3699) from2 pseudomonas aeruginosa pa01
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50......... 60.........70.......
Predicted Secondary structure 













...........
Query SS confidence 


















































. . . . . . . . . .

















.
Query Sequence  IRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFRDKNGLLEA. . . . . . . . . . TMRDITSQLRDAVLNRLH.
Query Conservation   

  

 

  
    
    
   

  



  


  
  
  
   ..........                  .
Alig confidence 


















































..........

















.
Template Conservation   

  

 

  
    
    
   

  



    
  
 

  
                                
Template Sequence  QRRQAILDAAXRLIVRDGVRAVRHRAVAAEAQVPLSATDIDDLITDTFALFVERNAEALSAFWSSVEGDLQEXAAVLADD
Template Known Secondary structure 

GGG

TS
TTT


Template Predicted Secondary structure 













Template SS confidence 















































































   35....40.........50.........60.........70.........80.........90.........100.........110....
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 
















Query SS confidence 















































































Query Sequence  ALPQGSAEQRLQAIVGGNFDETQVSSAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPREQAQEAGYGL
Query Conservation            
                                                                 
   
Alig confidence 















































































Template Conservation                                                                              
  
Template Sequence  PGARGSLVERIVELAVQYVQVQLTERREHLLAEQAFRQEALLNPRLRELADAHQRILSLGAVHFFQVLGSGQPEQDAKVL
Template Known Secondary structure  GGGTTTT
TT
S
Template Predicted Secondary structure 







Template SS confidence 















































































   120.........130.........140.........150.........160.........170.........180.........190.........
 
   158.160.........170... ......180.........190..
Predicted Secondary structure 


.



Query SS confidence 















.


















Query Sequence  AALIDGLWLRAALSGK. PLDKTRANSLTRHFITQHL
Query Conservation       
          .              
   
Alig confidence 















.


















Template Conservation       
                     
   
    
Template Sequence  TSIILQXEYQGLVDGVEQLAVDEXRAILRRYLNLVX
Template Known Secondary structure 
GGG

T
Template Predicted Secondary structure 







Template SS confidence 



































   200.........210.........220.........230.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions