Job Description P17446 Confidence 99.82% Date Thu Jan 5 11:36:13 GMT 2012 Rank 42 Aligned Residues 178 % Identity 11% Template c1sgmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		I	R	R	R	Q	L	I	D	A	T	L	E	A	I	N	E	V	G	M	H	D	A	T	I	A	Q	I	A	R	R	A	G	V	S	T	G	I	I	S	H	Y	F	R	D	.	K	N	G	L	L	E	A	T	M	R	D	I	T	S	Q	L	R	D	A	V	L	N	R	L	H	A	L	P	Q	G	S	A	E	Q	R
Query Conservation																																														.
Alig confidence																																														.																														.	.
Template Conservation																																																																												.	.
Template Sequence		D	S	R	E	K	I	L	H	T	A	S	R	L	S	Q	L	Q	G	Y	H	A	T	G	L	N	Q	I	V	K	E	S	G	A	P	K	G	S	L	Y	H	F	F	P	N	G	K	E	E	L	A	I	E	A	V	T	Y	T	G	K	I	V	E	H	L	I	Q	Q	S	M	D	E	S	S	D	.	.	P	V	E	A
Template Known Secondary structure																				T	T	T														S						S	T	T	T																											T		S	S	.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																				.	.																																								.
Query SS confidence																				.	.																																								.
Query Sequence		L	Q	A	I	V	G	G	N	F	D	E	T	Q	V	S	S	A	A	.	.	M	K	A	W	L	A	F	W	A	S	S	M	H	Q	P	M	L	Y	R	L	Q	Q	V	S	S	R	R	L	L	S	N	L	V	S	E	F	R	R	E	.	L	P	R	E	Q	A	Q	E	A	G	Y	G	L	A	A	L	I	D	G	L
Query Conservation																				.	.																																								.
Alig confidence																				.	.																																								.
Template Conservation
Template Sequence		I	Q	L	F	I	K	K	T	A	S	Q	F	D	N	T	E	S	I	K	G	I	P	V	G	L	L	A	S	E	T	A	L	I	S	E	P	L	R	T	V	C	M	K	V	F	K	S	W	E	A	V	F	A	R	K	L	M	E	N	G	F	A	E	E	E	A	N	Q	L	G	T	L	I	N	S	M	I	E	G	G
Template Known Secondary structure												T	T	S	S	G	G	G					T	T								T	T	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	R	A	A	L	S	G	K	P	L	D	K	T	R	A	N	S	L	T	R	H	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	M	L	S	L	T	N	K	D	K	T	P	L	L	L	I	A	E	Q	I	P	V	L	V
Template Known Secondary structure									T		S								T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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