Job Description P71229 Confidence 98.24% Date Thu Jan 5 12:12:26 GMT 2012 Rank 135 Aligned Residues 233 % Identity 11% Template c3te6A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain Resolution 2.80 Å

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		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.						.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																	.																	.	.																												.	.	.	.	.
Query SS confidence																	.																	.	.																												.	.	.	.	.
Query Sequence		L	S	E	Q	L	L	S	N	L	G	I	G	D	I	I	.	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	.	.	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	.	.	.	.	.	S	P	R	R	D	K	P	L	V	K	I	N	C	A
Query Conservation																	.																	.	.																												.	.	.	.	.
Alig confidence																	.																	.	.																												.	.	.	.	.
Template Conservation
Template Sequence		L	E	E	S	I	R	E	S	L	Q	K	R	E	L	L	K	S	Q	V	E	D	F	T	R	I	F	L	P	I	Y	D	S	L	X	S	S	Q	N	K	L	F	Y	I	T	N	A	D	D	S	T	K	F	Q	L	V	N	D	V	X	D	E	L	I	T	S	S	A	R	K	E	L	P	I	F	D	Y	I	H	I	D
Template Known Secondary structure																																				T	T												S																	T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
		406	.	.	.						410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.			.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.																																					.	.							.
Query SS confidence						.	.	.	.	.																																					.	.							.
Query Sequence		A	I	P	A	.	.	.	.	.	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	.	.	D	E	I	G	D	L	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I
Query Conservation						.	.	.	.	.																																					.	.							.
Alig confidence						.	.	.	.	.																																					.	.							.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	E	L	X	D	A	L	Y	E	K	I	W	F	A	I	S	K	E	N	G	D	I	S	L	E	A	L	N	F	Y	I	T	N	V	P	K	A	K	K	R	K	T	L	I	L	I	Q	N	P	E	N	L	L	S	E	K	I	L	Q	Y	F	E	K	W	I	S	S	K	N	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T															S																		S		G	G	G	S											S	S	S			T													S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure														.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	N	V	R	V	I	A	A	T	N	R	.	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.												.							.	.	.	.																					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																			.	.	.	.																					.	.
Template Sequence		.	S	K	L	S	I	I	C	V	G	G	H	N	V	T	I	R	E	Q	.	.	.	.	I	N	I	X	P	S	L	K	A	H	F	T	E	I	K	L	N	K	V	D	.	.	K	N	E	L	Q	Q	X	I	I	T	R	L	K	S	L	L	K	P	F	H	V	K	V	N	D	K	K	E	X	T	I	Y	N	N	I
Template Known Secondary structure		.											S	S							.	.	.	.			T						T	T											.	.																									T	T
Template Predicted Secondary structure		.																			.	.	.	.																					.	.
Template SS confidence
			689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.					.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.			.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
									544	.	.	.	.	.	550	.	.	.	.	.	.	.	.			.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	.	.	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	R	G	N	S	L
Query Conservation		.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		P	D	N	V	I	V	I	N	H	K	I	N	N	K	I	T	Q	L	I	A	K	N	V	A	N	V	S	G	S	T	E	K	A	F	K	I	C	E	A	A	V	E	I	S	K	K	D	F	V
Template Known Secondary structure			T	T																										S
Template Predicted Secondary structure
Template SS confidence
		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions