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Job DescriptionP71229
Confidence99.79%DateThu Jan 5 12:12:26 GMT 2012
Rank31Aligned Residues231
% Identity18%Templatec3pxiB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc
Resolution6.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   311........320.........330.........340.........350.........360.........370 .........380...
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Query Sequence  VGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDST. . . . . . . VLICGETGTGKEV
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Template Sequence  IAMVVSSWTAQTETDKLLNMENILHS. . . . . . . . . RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE
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   476...480.........490.........500. ........510.........520.........530.........540......
 
   384.....390.........400.........410.........420.........430.........440.........450.........460...
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Query Sequence  IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVL
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Template Sequence  LARALAESIFGDEESMIRIDM. . . . . . . . . SEYMEKHSTSLTEK. . . . . . . VRRKPYSVVLLDAIEKAHPDVFNILLQVL
Template Known Secondary structure  S
TT
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   554.....560.........570.... .....580........ .590.........600.........610.......
 
   464.....470.........480......... 490.........500.........510.........520.........530........
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Query Sequence  QEREIERLGGSRTIPVNVRVIAATNR. . . . . DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMAR
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Template Sequence  EDGRLTTVDFR. . . . . NTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEI. IVFHEK. . . . KHLTEIVSLMSDQLTK
Template Known Secondary structure  SB



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   635....640..... ....650.........660.........670.........680.. ...... .690.........700....
 
   539540... ......550....... ..560.........570......
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Query Sequence  HMNRA. . IDAIPTEALRQLMS. . WDWPGNVRELENVIERAVL
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Template Sequence  RLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVE
Template Known Secondary structure  TTT

GGG

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   733......740.........750.........760.........770....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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