Job Description P71229 Confidence 99.86% Date Thu Jan 5 12:12:26 GMT 2012 Rank 19 Aligned Residues 252 % Identity 16% Template c3pfiB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate Resolution 2.69 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	.	.	.	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S	E	L	F	G	H
Query Conservation																								.	.	.
Alig confidence																								.	.	.																												.	.	.																								.	.
Template Conservation																																																						.	.	.																								.	.
Template Sequence		N	F	D	G	Y	I	G	Q	E	S	I	K	K	N	L	N	V	F	I	A	A	A	K	K	R	N	E	C	L	D	H	I	L	F	S	G	P	A	G	L	G	K	T	T	L	A	N	I	I	S	Y	E	.	.	.	X	S	A	N	I	K	T	T	A	A	P	X	I	E	K	S	G	D	L	A	A	I	L	.	.
Template Known Secondary structure			S	T	T			S																		T	T										S	S	T	T	S	S												.	.	.	T	T								G	G	G			S	S								.	.
Template Predicted Secondary structure																																																						.	.	.																								.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	L	S	E	G	D	I	L	F	I	D	E	I	H	R	L	S	P	A	I	E	E	V	L	Y	P	A	X	E	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	K	F	T	L	I	G	A	T	T	.	.	.	.	.	.	.	R	A	G	X
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			T	T							S	G	G	G															T			.	.	.	.	.	.	.	.	.	.	.	.									S	.	.	.	.	.	.	.		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
																	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.													.	.	.	.	.	.	.	.	140								.	.	.	.
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	.
Query Conservation																																																																																	.
Alig confidence														.						.	.																			.	.	.	.	.	.	.															.																				.
Template Conservation														.						.	.																			.	.	.	.	.	.	.															.
Template Sequence		L	S	N	P	L	R	D	R	F	G	X	Q	.	F	R	L	E	F	.	.	Y	K	D	S	E	L	A	L	I	L	Q	K	A	A	L	K	L	N	.	.	.	.	.	.	.	K	T	C	E	E	K	A	A	L	E	I	A	K	R	.	S	R	S	T	P	R	I	A	L	R	L	L	K	R	V	R	D	F	A	D
Template Known Secondary structure		S						T	T		S			.						.	.																	T	T	.	.	.	.	.	.	.															.	T	T	T
Template Predicted Secondary structure														.						.	.																			.	.	.	.	.	.	.															.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
				579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	G	N	S	L	N	L	H	L	N	V	R	Q	S	R	L	L	P	T	L	N	E	D	S	A	L	R	S	S	M	A	Q	L	L	H	P	T	T	P	E	N	D	E	E	E	R	Q	R	I	V	Q	V	L	R	E	T	N	G	I	V	A	G	P	R	G	A	A	T	R	L	G	M	K	R	T	T	L	L
Query Conservation		.	.
Alig confidence		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	D	E	E	I	I	T	E	K	R	A	N	E	A	L	N	S	L	G	V	N	E	L	G	F	D	A	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	R	Y	L	E	L	L	T	A	A	K	Q	K	P	I	G	L	A	S	I	A	A	A	L	S	E	D	E	N	T	I	E
Template Known Secondary structure			T	T		S															T			T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T			B									T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		657	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	M	Q	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	I	E	P	Y
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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