Job Description P71229 Confidence 99.06% Date Thu Jan 5 12:12:26 GMT 2012 Rank 100 Aligned Residues 213 % Identity 18% Template c3h4mC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: aaa atpase domain of the proteasome- activating nucleotidase Resolution 3.11 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.												.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	.	.	.	.	.	.	.	.	.	.	.	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																												.	.	.															.	.
Template Conservation																																																															.	.	.															.	.
Template Sequence		R	Y	E	D	I	G	G	L	E	K	Q	M	Q	E	I	R	E	V	V	E	L	P	L	K	H	P	E	L	F	E	K	V	G	I	E	P	P	K	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	T	E	T	.	.	.	N	A	T	F	I	R	V	V	G	S	E	L	V	K	.	.
Template Known Secondary structure			G	G	G			S										T	T	T	T													T					S						S	S	S	S	S	S												T	.	.	.	T								G	G	G	S			.	.
Template Predicted Secondary structure																																																															.	.	.															.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.												.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	.	.	.	.	.	.	.	.	.	.	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																																												.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	F	I	G	E	G	A	S	L	V	K	D	I	F	K	L	A	K	E	K	A	P	S	I	I	F	I	D	E	I	D	A	I	A	A	K	R	T	D	A	L	T	G	G	D	R	E	V	Q	R	T	L	M	Q	L	L	A	E	M	.	.	.	.	.	.	D	G	F	D	A	R	G	D
Template Known Secondary structure		.	.	.	.	.	.	.		S	T	T	T	T	T													T		S								G	G	G	T	S	B			S	S	S				S	T														T	.	.	.	.	.	.	T	S	S		S	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																												.	.	.	.	.	.
Template SS confidence
									243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.				.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	.	.	.	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S
Query Conservation																													.	.	.
Alig confidence										.	.	.	.	.	.	.													.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation										.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		V	K	I	I	G	A	T	N	.	.	.	.	.	.	.	R	P	D	I	L	D	P	A	I	L	R	P	G	R	F	D	R	I	I	E	V	P	A	P	D	E	K	G	R	L	E	I	L	K	I	H	T	.	.	.	.	.	.	.	.	.	.	.	.	R	K	M	N	L	A	E	D	V	N	L	E	E	I	A	.
Template Known Secondary structure									S	.	.	.	.	.	.	.	S	G	G	G	B						S	T	T	S																						T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		B		S	S								.
Template Predicted Secondary structure										.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.													.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		558	.	560	.	.		.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.				.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure							.																	.	.	.
Query SS confidence							.																	.	.	.
Query Sequence		W	D	W	P	G	.	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	.	.	.	R	G	N	S	L	N	L	H	L	N	V	R	Q	S	R
Query Conservation							.																	.	.	.
Alig confidence							.																	.	.	.
Template Conservation
Template Sequence		K	M	T	E	G	C	V	G	A	E	L	K	A	I	C	T	E	A	G	M	N	A	I	R	E	L	R	D	Y	V	T	M	D	D	F	R	K	A	V	E
Template Known Secondary structure		T	T	S	T	T																				T	T		S	S	B
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions