 |
Job Description | P71229 | Confidence | 88.72% | Date | Thu Jan 5 12:12:26 GMT 2012 |
Rank | 390 | Aligned Residues | 93 |
% Identity | 16% | Template | c3geiB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:trna modification gtpase mnme; |
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
|
Resolution | 3.40 Å |
|
 |
  |   |
296 | . | . | . | 300 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | |
|
. | . | . | . | 350 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 360 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |
|  |  |  |
|
|  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | C | Q | L | L | Q | H | I | A | D | R | I | . |
. |
. |
. |
. |
. |
A | I | A | V | G | N | A | D | A | W | R | S | M | T | D | L | Q | E | S | L | Q | Q | E | N | H | Q | L | S | E | Q | L | L | S | N | L | G | I | G | . |
. |
D | I | I | Y | Q | S | Q | A | . |
. |
. |
. |
. |
M | E | D | L | L | Q | Q | V | D |
Query Conservation |   |
|   |   |
|
|
|   |
|
|   |
|
| . | . | . | . | . | . |
|
|
|
|   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   | . | . |   |
|
|
|   |
|   |   | . | . | . | . | . |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |
Template Sequence |   |
D | L | L | Q | A | E | A | I | G | E | M | I | H | A | R | T | E | S | A | Y | R | T | A | V | S | Q | M | K | G | D | L | S | V | R | L | G | G | L | R | E | Q | L | I | R | S | C | A | L | I | E | L | E | L | D | F | S | E | E | D | V | E | F | Q | S | R | D | E | L | T | M | Q | I | E | T | L | R | S | E | V | N |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . |
  |
  |   |
363 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
K | S | D | S | T | V | L | I | C | G | E | T | G | T | G | K | E | V | I | A | R | A | I |
Query Conservation |   |
  |   |
| . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|
|
|   |
|
|   |
|
|
|
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|   |
|
Template Sequence |   |
R | L | I | D | S | Y | Q | H | G | R | I | V | S | E | G | V | S | T | V | I | A | G | K | P | N | A | G | K | S | T | L | L | N | T | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |
|
| T | T | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
216 | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|