Job Description P71229 Confidence 100.00% Date Thu Jan 5 12:12:26 GMT 2012 Rank 2 Aligned Residues 238 % Identity 47% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	.	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T
Template Known Secondary structure							S															T	S		S								T	T	S	S															.		S							S	S	S	S		T	T	T										S		S	S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y
Template Known Secondary structure		S												T	T	T	S						T	G	G	G	S															S					B	T																S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	R	G	N	S	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I	L	C	E	G	E	V	I	K
Template Known Secondary structure					T	S								G	G	G	S	T	T																	T	T						B										T				T	T															T			S	S	B
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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