Job Description P71229 Confidence 98.87% Date Thu Jan 5 12:12:26 GMT 2012 Rank 117 Aligned Residues 198 % Identity 23% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.												.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	L	G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	.	.	.	.	.	.	.	.	.	.	.	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																														.	.	.										.	.	.	.
Template Conservation																																																																		.	.	.										.	.	.	.
Template Sequence		P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	.	.	.	Q	A	N	F	I	S	I	K	G	.	.	.	.
Template Known Secondary structure						T	T	T	T		S																								T	S						S								T	T	S													T	.	.	.	T									.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.										.	.	.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.															.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.								T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
							545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.			.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																		.	.				.
Query SS confidence																																		.	.				.
Query Sequence		R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	.	.	R	L	N	.	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A
Query Conservation																																		.	.				.
Alig confidence																	.	.	.	.	.	.	.											.	.				.															.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																															.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	.	.	.	.	.	.	.	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	I	L	K	A	N	L	R	K	S	.	.	.	.	.	.	.	.	.	P	V	A	K	D	V
Template Known Secondary structure		S		T	T	S	S								S		.	.	.	.	.	.	.	G	G	G			G	G	G	T	S	T	T	T	S											T	T					.	.	.	.						T	T	T	S	.	.	.	.	.	.	.	.	.		B		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.																															.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.								.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.					.	.	.	.	660	.	.	.	.										.	.	.	.	.	670
			552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A
Template Known Secondary structure							T	T	T		S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions