Job Description P71229 Confidence 98.96% Date Thu Jan 5 12:12:26 GMT 2012 Rank 106 Aligned Residues 195 % Identity 19% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.											.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	N	L	G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	.	.	.	.	.	.	.	.	.	.	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P
Query Conservation																															.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L
Template Known Secondary structure							G	G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	.	.	.	T	T									S	T	T
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																																.	.	.														.	.
Query SS confidence																																.	.	.														.	.
Query Sequence		A	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	L	.	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V
Query Conservation																																.	.	.														.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.														.	.															.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	.	.	.	.	.	.	.	.	V	G	V	D	N	D	G	I	L	V
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T												T		S							S																				T	.	.	.	.	.	.	.	.	S	S	S			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		205																	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.	260
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	.	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G
Query Conservation																												.
Alig confidence							.	.	.	.	.	.	.															.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	A	T	N	.	.	.	.	.	.	.	I	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	.	.	.	.	.	.	.	.	.	.	.	A	M	F	R	L	H	L	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y
Template Known Secondary structure						S	.	.	.	.	.	.	.			T	T	S									S										S					.	.	.	.	.	.	.	.	.	.	.								T	T			B													S			S
Template Predicted Secondary structure							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.												.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions