Job Description P71229 Confidence 99.62% Date Thu Jan 5 12:12:26 GMT 2012 Rank 55 Aligned Residues 228 % Identity 15% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		338	.	340	.	.	.	.	.	.		.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure											.						.																																													.	.
Query SS confidence											.						.																																													.	.
Query Sequence		L	L	S	N	L	G	I	G	D	.	I	I	Y	Q	S	.	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	.	.	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E
Query Conservation											.						.																																													.	.
Alig confidence											.						.																																													.	.
Template Conservation
Template Sequence		L	N	P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V	D
Template Known Secondary structure				S	S		S	G	G	G					T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Sequence		S	M	K	.	.	.	.	.	.	.	.	.	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	.	.	.	.	.	.	.	.	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	T	S										T	T	T		S							G	G	G	G	T	T													.	.	.	.	.	.	.	.					T	T	T								S	S		T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220									.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	.	.	.	.	.	.	.	.	.	.	.	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	.	V	D	D	N	L	R	R	L	R	G	A	I	I	K
Template Known Secondary structure			S	S											S	S																									.	.	.	.	.	.	.	.	.	.	.	T					T	T									.			S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.												280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.
		574	.	.			.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		A	V	L	.	.	L	T	R	G	N	S	L	N	L	H	L	N	V	R	Q	S	R	L
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D
Template Known Secondary structure									S	S	S											T	G	G
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions