Job Description P71229 Confidence 98.83% Date Thu Jan 5 12:12:26 GMT 2012 Rank 122 Aligned Residues 218 % Identity 16% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.												.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	.	.	.	.	.	.	.	.	.	.	.	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																											.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	.	.	.	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	.	.	.	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.				640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.																				.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	.	.	.	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	.	.	.	.	.	.	.	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P
Template Known Secondary structure			.	.	.	.	.	.	.	.	.													T		S							T		T	T	T				T	T											.	.	.	.	.	.	.	T			S	T	T									S		G	G	G	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template SS confidence
		660										.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.								.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.		.	.	.	.	.	.	.	570	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	.	N	V	R	E	L	E	N	V	I
Query Conservation																																																																								.
Alig confidence											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																																	.
Template Conservation											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Sequence		A	I	L	R	P	G	R	L	D	.	.	.	.	.	.	.	K	T	L	F	V	G	L	P	P	P	A	D	R	L	.	.	.	.	.	.	.	.	A	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V
Template Known Secondary structure					S	T	T	S	S		.	.	.	.	.	.	.							S								.	.	.	.	.	.	.	.							T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G	S
Template Predicted Secondary structure											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.								.	.	.	.	.	.	.	.	750	.	.	.	.	.									.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
		572	.	.	.	.	.	.				.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		E	R	A	V	L	L	T	.	.	.	R	G	N	S	L	N	L	H	L	N	V	R	Q	S	R	L	L	P	T	L
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		R	E	A	S	I	C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure																B										T	T
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions