Job Description P71229 Confidence 98.85% Date Thu Jan 5 12:12:26 GMT 2012 Rank 119 Aligned Residues 220 % Identity 17% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.							.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.
Predicted Secondary structure																																			.	.																						.	.	.	.	.	.																	.
Query SS confidence																																			.	.																						.	.	.	.	.	.																	.
Query Sequence		L	L	S	N	L	G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	.	.	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	.	.	.	.	.	.	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	.	P
Query Conservation																																			.	.																						.	.	.	.	.	.																	.
Alig confidence																																			.	.																						.	.	.	.	.	.																	.
Template Conservation
Template Sequence		L	L	P	D	Y	V	P	D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	R	H	R	E	T
Template Known Secondary structure			S	T	T				S			T	T											T	T	G	G	G	T	S	S										B		T	T	S	S																				T										T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.									.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.														.
Query SS confidence																																.	.	.	.	.	.	.	.														.
Query Sequence		A	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	.	.	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	L	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V
Query Conservation																																.	.	.	.	.	.	.	.														.
Alig confidence																																.	.	.	.	.	.	.	.														.															.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	R	.	.	.	.	.	.	.	.	.	.	I	N	Q	E
Template Known Secondary structure														S					S	S																T	T	S		S								T	T	T					S	T	T											.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.											170	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	.	.	M	S
Query Conservation																																																																														.	.
Alig confidence														.	.	.	.																										.	.																.	.	.	.	.														.	.
Template Conservation														.	.	.	.																										.	.																.	.	.	.	.
Template Sequence		L	V	S	L	V	G	I	T	N	S	L	G	.	.	.	.	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	.	.	P	Q	L	R	D	I	L	E	T	R	A	E	E	A	F	.	.	.	.	.	N	P	G	V	L	D	P	D	V	V	P	L	C	A	A	L	A
Template Known Secondary structure										S		S	T	.	.	.	.	T	S	S	S	S						T	T	T	T	S					B						.	.															B	.	.	.	.	.		T	T	T	B		S	S
Template Predicted Secondary structure														.	.	.	.																										.	.																.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A
Template Known Secondary structure			S	S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions