Job Description P71229 Confidence 99.07% Date Thu Jan 5 12:12:26 GMT 2012 Rank 96 Aligned Residues 225 % Identity 22% Template c2r65A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex Resolution 3.30 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.											.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	L	G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	.	.	.	.	.	.	.	.	.	.	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		P	N	V	R	F	K	D	M	A	G	N	E	E	A	K	E	E	V	V	E	I	V	D	F	L	K	Y	P	E	R	Y	A	N	L	G	A	K	I	P	K	G	V	L	L	V	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	G	E	A	.	.	.	H	V	P	F	F	S	M	G	G	S	S	F	I	E
Template Known Secondary structure						G	G	G	S		S							T	T									S						T	T	T					S							S	S	S	S	S													.	.	.	T								T	G	G	G	G	S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.						.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	.	.	.	.	.	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I
Query Conservation																																												.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																		.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	M	F	V	G	L	G	A	S	R	V	R	D	L	F	E	T	A	K	K	Q	A	P	S	I	I	F	I	D	E	I	D	A	I	G	K	N	D	E	R	E	Q	T	L	N	Q	L	L	A	E	M	D	G	.	.	.	.	.	.	.	.	F	G	S	E	N	A	P	V	I	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.			S	S	S		S	T	T											T		S						T	T	G	G	G	T						S	T	T	T	S	S	S					T	T		.	.	.	.	.	.	.	.		S		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.
Template SS confidence
											242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V
Query Conservation
Alig confidence								.	.															.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.															.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	T	N	R	P	.	.	E	I	L	D	P	A	L	M	R	P	G	R	F	D	.	.	R	Q	V	L	V	D	K	P	D	F	N	G	R	V	E	I	L	K	V	H	I	.	.	.	.	.	.	.	.	.	.	.	.	K	G	V	K	L	A	N	D	V	N	L	Q	E	V	A	K	L	T	A	G	L	A	G
Template Known Secondary structure					S		T	.	.	T	S	S		G	G	G	G	S	T	T	S	S		.	.							S															.	.	.	.	.	.	.	.	.	.	.	.	T	T	S				S													S			S
Template Predicted Secondary structure								.	.															.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.													.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.				.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		R	E	L	E	N	V	I	E	R	A	V	L	L	T	.	.	.	R	G	N	S	L	N	L	H	L	N	V	R	Q	S	R	L	L	P	T	L	N	E
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		A	D	L	A	N	I	I	N	E	A	A	L	L	A	G	R	N	N	Q	K	E	V	R	Q	Q	H	L	K	E	A	V	E	R	G	I	A	G	L	E
Template Known Secondary structure																					S	S									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions